Human Gene SOSTDC1 (ENST00000307068.5_7) from GENCODE V47lift37
  Description: sclerostin domain containing 1 (from RefSeq NM_015464.3)
Gencode Transcript: ENST00000307068.5_7
Gencode Gene: ENSG00000171243.8_9
Transcript (Including UTRs)
   Position: hg19 chr7:16,501,106-16,505,363 Size: 4,258 Total Exon Count: 2 Strand: -
Coding Region
   Position: hg19 chr7:16,502,173-16,505,293 Size: 3,121 Coding Exon Count: 2 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:16,501,106-16,505,363)mRNA (may differ from genome)Protein (206 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: SOSD1_HUMAN
DESCRIPTION: RecName: Full=Sclerostin domain-containing protein 1; AltName: Full=Ectodermal BMP inhibitor; Short=Ectodin; AltName: Full=Uterine sensitization-associated gene 1 protein; Short=USAG-1; Flags: Precursor;
FUNCTION: May be involved in the onset of endometrial receptivity for implantation/sensitization for the decidual cell reaction Enhances Wnt signaling and inhibits TGF-beta signaling (By similarity). Directly antagonizes activity of BMP2, BMP4, BMP6 and BMP7 in a dose-dependent manner.
SUBUNIT: Interacts with BMP2, BMP4, BMP6 and BMP7 with high affinity.
SUBCELLULAR LOCATION: Secreted.
TISSUE SPECIFICITY: Highly expressed in kidney and weakly in lung.
SIMILARITY: Belongs to the sclerostin family.
SIMILARITY: Contains 1 CTCK (C-terminal cystine knot-like) domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: SOSTDC1
Diseases sorted by gene-association score: alveolar periostitis (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 6.33 RPKM in Skin - Not Sun Exposed (Suprapubic)
Total median expression: 52.58 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -3.9070-0.056 Picture PostScript Text
3' UTR -222.201067-0.208 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR006207 - Cys_knot_C
IPR008835 - Sclerostin/SOSTDC1

Pfam Domains:
PF00007 - Cystine-knot domain
PF03045 - DAN domain
PF05463 - Sclerostin (SOST)

SCOP Domains:
57501 - Cystine-knot cytokines

ModBase Predicted Comparative 3D Structure on Q6X4U4
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0036122 BMP binding
GO:0098821 BMP receptor activity

Biological Process:
GO:0007389 pattern specification process
GO:0010454 negative regulation of cell fate commitment
GO:0016055 Wnt signaling pathway
GO:0030178 negative regulation of Wnt signaling pathway
GO:0030509 BMP signaling pathway
GO:0030514 negative regulation of BMP signaling pathway
GO:0031069 hair follicle morphogenesis
GO:0042475 odontogenesis of dentin-containing tooth
GO:0045662 negative regulation of myoblast differentiation
GO:0060648 mammary gland bud morphogenesis
GO:0090090 negative regulation of canonical Wnt signaling pathway
GO:2000016 negative regulation of determination of dorsal identity

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space


-  Descriptions from all associated GenBank mRNAs
  AK093408 - Homo sapiens cDNA FLJ36089 fis, clone TESTI2020426, highly similar to Sclerostin domain-containing protein 1 precursor.
AX748107 - Sequence 1632 from Patent EP1308459.
AF361494 - Homo sapiens CDA019 mRNA, complete cds.
AL050024 - Homo sapiens mRNA; cDNA DKFZp564D206 (from clone DKFZp564D206).
BC008484 - Homo sapiens sclerostin domain containing 1, mRNA (cDNA clone MGC:14794 IMAGE:4048654), complete cds.
JD469559 - Sequence 450583 from Patent EP1572962.
JD454441 - Sequence 435465 from Patent EP1572962.
JD429859 - Sequence 410883 from Patent EP1572962.
JD267731 - Sequence 248755 from Patent EP1572962.
AB059270 - Homo sapiens mRNA for ectodin, complete cds.
AK315682 - Homo sapiens cDNA, FLJ96776, Homo sapiens sclerostin domain containing 1 (SOSTDC1), mRNA.
CU678977 - Synthetic construct Homo sapiens gateway clone IMAGE:100020749 5' read SOSTDC1 mRNA.
HQ448027 - Synthetic construct Homo sapiens clone IMAGE:100071402; CCSB005708_02 sclerostin domain containing 1 (SOSTDC1) gene, encodes complete protein.
KJ893492 - Synthetic construct Homo sapiens clone ccsbBroadEn_02886 SOSTDC1 gene, encodes complete protein.
AB590718 - Synthetic construct DNA, clone: pFN21AE1701, Homo sapiens SOSTDC1 gene for sclerostin domain containing 1, without stop codon, in Flexi system.

-  Other Names for This Gene
  Alternate Gene Symbols: A8MUA6, CDA019, ENST00000307068.1, ENST00000307068.2, ENST00000307068.3, ENST00000307068.4, NM_015464, Q6X4U4, Q96HJ7, Q9Y3U3, SOSD1_HUMAN, uc317nzd.1, uc317nzd.2, USAG1
UCSC ID: ENST00000307068.5_7
RefSeq Accession: NM_015464.3
Protein: Q6X4U4 (aka SOSD1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.