Human Gene SPAG5 (ENST00000321765.10_9) from GENCODE V47lift37
  Description: sperm associated antigen 5 (from RefSeq NM_006461.4)
Gencode Transcript: ENST00000321765.10_9
Gencode Gene: ENSG00000076382.17_13
Transcript (Including UTRs)
   Position: hg19 chr17:26,904,592-26,926,043 Size: 21,452 Total Exon Count: 24 Strand: -
Coding Region
   Position: hg19 chr17:26,904,717-26,925,964 Size: 21,248 Coding Exon Count: 24 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:26,904,592-26,926,043)mRNA (may differ from genome)Protein (1193 aa)
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-  Comments and Description Text from UniProtKB
  ID: SPAG5_HUMAN
DESCRIPTION: RecName: Full=Sperm-associated antigen 5; AltName: Full=Astrin; AltName: Full=Deepest; AltName: Full=Mitotic spindle-associated protein p126; Short=MAP126;
FUNCTION: Essential component of the mitotic spindle required for normal chromosome segregation and progression into anaphase. Required for chromosome alignment, normal timing of sister chromatid segregation, and maintenance of spindle pole architecture. The astrin (SPAG5)-kinastrin (SKAP) complex promotes stable microtubule-kinetochore attachments.
SUBUNIT: Homodimer, with a globular head domain and a long stalk. Homooligomer; the globular head domains associate, resulting in aster-like structures. Binds to microtubules in the mitotic spindle. Interacts with DCLRE1B/Apollo. Part of an astrin (SPAG5)- kinastrin (SKAP) complex containing SKAP, SPAG5, PLK1, DYNLL1 and SGOL2. Interacts with SKAP.
SUBCELLULAR LOCATION: Cytoplasm. Cytoplasm, cytoskeleton, spindle. Cytoplasm, cytoskeleton, spindle pole. Chromosome, centromere, kinetochore. Note=In a punctate pattern in interphase cells. During mitosis, detected at spindle poles during prophase, throughout the spindle in metaphase and anaphase, and at midzone microtubules in anaphase and telophase. Detected on kinetochores of chromosomes that have congressed. The astrin (SPAG5)-kinastrin (SKAP) complex localizes to the microtubule plus ends (By similarity).
TISSUE SPECIFICITY: Highly expressed in testis. Detected at low levels in placenta, liver, pancreas, thymus and colon.
PTM: Phosphorylated upon DNA damage, probably by ATM or ATR.
SEQUENCE CAUTION: Sequence=AAD02813.1; Type=Frameshift; Positions=1093; Sequence=AAL06396.2; Type=Frameshift; Positions=1135;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: SPAG5
Diseases sorted by gene-association score: patellar tendinitis (18), cryptorchidism (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 51.43 RPKM in Testis
Total median expression: 203.99 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -32.1079-0.406 Picture PostScript Text
3' UTR -12.80125-0.102 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on Q96R06
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0008017 microtubule binding

Biological Process:
GO:0000070 mitotic sister chromatid segregation
GO:0007049 cell cycle
GO:0007051 spindle organization
GO:0007059 chromosome segregation
GO:0032388 positive regulation of intracellular transport
GO:0051294 establishment of spindle orientation
GO:0051301 cell division
GO:0051988 regulation of attachment of spindle microtubules to kinetochore
GO:0071539 protein localization to centrosome
GO:0090235 regulation of metaphase plate congression

Cellular Component:
GO:0000775 chromosome, centromeric region
GO:0000776 kinetochore
GO:0000777 condensed chromosome kinetochore
GO:0000922 spindle pole
GO:0005694 chromosome
GO:0005737 cytoplasm
GO:0005815 microtubule organizing center
GO:0005819 spindle
GO:0005856 cytoskeleton
GO:0005874 microtubule
GO:0005876 spindle microtubule
GO:0030496 midbody
GO:0034451 centriolar satellite
GO:0035371 microtubule plus-end
GO:0072686 mitotic spindle
GO:0097431 mitotic spindle pole


-  Descriptions from all associated GenBank mRNAs
  AL122116 - Homo sapiens mRNA; cDNA DKFZp434N2421 (from clone DKFZp434N2421).
AF399910 - Homo sapiens mitotic spindle associated protein (ASTRIN) mRNA, complete cds.
AL137585 - Homo sapiens mRNA; cDNA DKFZp434H1210 (from clone DKFZp434H1210); partial cds.
AK025725 - Homo sapiens cDNA: FLJ22072 fis, clone HEP11756, highly similar to AF063308 Homo sapiens coiled-coil related protein DEEPEST (DEEPEST) mRNA.
BC000322 - Homo sapiens sperm associated antigen 5, mRNA (cDNA clone MGC:8476 IMAGE:2821784), complete cds.
AF063308 - Homo sapiens coiled-coil related protein DEEPEST (DEEPEST) mRNA, complete cds.
JD308541 - Sequence 289565 from Patent EP1572962.
AF345347 - Homo sapiens mitotic spindle-associated protein p126 mRNA, complete cds.
AK292398 - Homo sapiens cDNA FLJ78740 complete cds, highly similar to Homo sapiens sperm associated antigen 5 (SPAG5), mRNA.
JD189979 - Sequence 171003 from Patent EP1572962.
JD392934 - Sequence 373958 from Patent EP1572962.
JD065541 - Sequence 46565 from Patent EP1572962.
JD090848 - Sequence 71872 from Patent EP1572962.
JD172527 - Sequence 153551 from Patent EP1572962.
AK316079 - Homo sapiens cDNA, FLJ78978 complete cds.
BC113055 - Homo sapiens sperm associated antigen 5, mRNA (cDNA clone IMAGE:40022727), partial cds.
JD021031 - Sequence 2055 from Patent EP1572962.
JD031020 - Sequence 12044 from Patent EP1572962.
JD023227 - Sequence 4251 from Patent EP1572962.
JD034171 - Sequence 15195 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000321765.1, ENST00000321765.2, ENST00000321765.3, ENST00000321765.4, ENST00000321765.5, ENST00000321765.6, ENST00000321765.7, ENST00000321765.8, ENST00000321765.9, NM_006461, O95213, Q96R06, Q9BWE8, Q9NT17, Q9UFE6, SPAG5_HUMAN, uc317rdg.1, uc317rdg.2
UCSC ID: ENST00000321765.10_9
RefSeq Accession: NM_006461.4
Protein: Q96R06 (aka SPAG5_HUMAN or SPA5_HUMAN)

-  Gene Model Information
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-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.