Human Gene SRP68 (ENST00000307877.7_8) from GENCODE V47lift37
  Description: signal recognition particle 68, transcript variant 1 (from RefSeq NM_014230.4)
Gencode Transcript: ENST00000307877.7_8
Gencode Gene: ENSG00000167881.15_9
Transcript (Including UTRs)
   Position: hg19 chr17:74,034,866-74,068,598 Size: 33,733 Total Exon Count: 16 Strand: -
Coding Region
   Position: hg19 chr17:74,035,787-74,068,572 Size: 32,786 Coding Exon Count: 16 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:74,034,866-74,068,598)mRNA (may differ from genome)Protein (627 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedReactomeUniProtKB
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: SRP68_HUMAN
DESCRIPTION: RecName: Full=Signal recognition particle 68 kDa protein; Short=SRP68;
FUNCTION: Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP68 binds the 7S RNA, SRP72 binds to this complex subsequently. This ribonucleoprotein complex might interact directly with the docking protein in the ER membrane and possibly participate in the elongation arrest function.
SUBUNIT: Signal recognition particle consists of a 7S RNA molecule of 300 nucleotides and six protein subunits: SRP72, SRP68, SRP54, SRP19, SRP14 and SRP9.
SUBCELLULAR LOCATION: Cytoplasm. Nucleus, nucleolus.
DOMAIN: The RNA-binding domain is located near the N-terminus.
SIMILARITY: Belongs to the SRP68 family.
WEB RESOURCE: Name=Wikipedia; Note=Signal recognition particle entry; URL="http://en.wikipedia.org/wiki/Signal-recognition_particle";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 38.41 RPKM in Skin - Sun Exposed (Lower leg)
Total median expression: 1426.85 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -10.6026-0.408 Picture PostScript Text
3' UTR -257.90921-0.280 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR026258 - SRP68
IPR011990 - TPR-like_helical

Pfam Domains:
PF16969 - RNA-binding signal recognition particle 68

SCOP Domains:
81901 - HCP-like
48452 - TPR-like

ModBase Predicted Comparative 3D Structure on Q9UHB9
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserGenome Browser
Gene DetailsGene Details Gene DetailsGene DetailsGene Details
Gene SorterGene Sorter Gene SorterGene SorterGene Sorter
 RGDEnsembl WormBaseSGD
    Protein SequenceProtein Sequence
    AlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003723 RNA binding
GO:0005047 signal recognition particle binding
GO:0005515 protein binding
GO:0008312 7S RNA binding
GO:0019904 protein domain specific binding
GO:0030942 endoplasmic reticulum signal peptide binding
GO:0043022 ribosome binding

Biological Process:
GO:0006614 SRP-dependent cotranslational protein targeting to membrane
GO:0042493 response to drug
GO:0045047 protein targeting to ER

Cellular Component:
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum
GO:0005786 signal recognition particle, endoplasmic reticulum targeting
GO:0005829 cytosol
GO:0005840 ribosome
GO:0005925 focal adhesion
GO:0048500 signal recognition particle


-  Descriptions from all associated GenBank mRNAs
  AK027320 - Homo sapiens cDNA FLJ14414 fis, clone HEMBA1004847, highly similar to SIGNAL RECOGNITION PARTICLE 68 KD PROTEIN.
AK126258 - Homo sapiens cDNA FLJ44270 fis, clone TLIVE2008229, highly similar to SIGNAL RECOGNITION PARTICLE 68 KDA PROTEIN.
AK002002 - Homo sapiens cDNA FLJ11140 fis, clone PLACE1006488, highly similar to Signal recognition particle 68 kDa protein.
AL512708 - Homo sapiens mRNA; cDNA DKFZp762J035 (from clone DKFZp762J035).
AK027322 - Homo sapiens cDNA FLJ14416 fis, clone HEMBA1005202, highly similar to SIGNAL RECOGNITION PARTICLE 68 KD PROTEIN.
AK074698 - Homo sapiens cDNA FLJ90217 fis, clone MAMMA1002234, highly similar to SIGNAL RECOGNITION PARTICLE 68 KD PROTEIN.
LF384820 - JP 2014500723-A/192323: Polycomb-Associated Non-Coding RNAs.
LP895360 - Sequence 224 from Patent EP3253886.
AK301100 - Homo sapiens cDNA FLJ54176 complete cds, highly similar to Signal recognition particle 68 kDa protein.
BC000760 - Homo sapiens cDNA clone IMAGE:2821490, containing frame-shift errors.
BC020238 - Homo sapiens signal recognition particle 68kDa, mRNA (cDNA clone MGC:31966 IMAGE:4876712), complete cds.
KJ901763 - Synthetic construct Homo sapiens clone ccsbBroadEn_11157 SRP68 gene, encodes complete protein.
AF195951 - Homo sapiens signal recognition particle 68 mRNA, complete cds.
MA620397 - JP 2018138019-A/192323: Polycomb-Associated Non-Coding RNAs.
AK092935 - Homo sapiens cDNA FLJ35616 fis, clone SPLEN2010469.
AX747814 - Sequence 1339 from Patent EP1308459.
BC013308 - Homo sapiens cDNA clone IMAGE:3028490, containing frame-shift errors.
DQ786315 - Homo sapiens clone HLS_IMAGE_814791 mRNA sequence.
AK097962 - Homo sapiens cDNA FLJ40643 fis, clone THYMU2017099, highly similar to SIGNAL RECOGNITION PARTICLE 68 KDA PROTEIN.
LF328428 - JP 2014500723-A/135931: Polycomb-Associated Non-Coding RNAs.
JD312854 - Sequence 293878 from Patent EP1572962.
LF328429 - JP 2014500723-A/135932: Polycomb-Associated Non-Coding RNAs.
JD023770 - Sequence 4794 from Patent EP1572962.
JD202321 - Sequence 183345 from Patent EP1572962.
JD141184 - Sequence 122208 from Patent EP1572962.
JD030524 - Sequence 11548 from Patent EP1572962.
JD373654 - Sequence 354678 from Patent EP1572962.
JD238818 - Sequence 219842 from Patent EP1572962.
JD216864 - Sequence 197888 from Patent EP1572962.
LF328430 - JP 2014500723-A/135933: Polycomb-Associated Non-Coding RNAs.
JD492922 - Sequence 473946 from Patent EP1572962.
LF328431 - JP 2014500723-A/135934: Polycomb-Associated Non-Coding RNAs.
JD256483 - Sequence 237507 from Patent EP1572962.
JD257227 - Sequence 238251 from Patent EP1572962.
AK098159 - Homo sapiens cDNA FLJ40840 fis, clone TRACH2013982, moderately similar to SIGNAL RECOGNITION PARTICLE 68 KDA PROTEIN.
LF328434 - JP 2014500723-A/135937: Polycomb-Associated Non-Coding RNAs.
LF328435 - JP 2014500723-A/135938: Polycomb-Associated Non-Coding RNAs.
LF328436 - JP 2014500723-A/135939: Polycomb-Associated Non-Coding RNAs.
LF328440 - JP 2014500723-A/135943: Polycomb-Associated Non-Coding RNAs.
MA564005 - JP 2018138019-A/135931: Polycomb-Associated Non-Coding RNAs.
MA564006 - JP 2018138019-A/135932: Polycomb-Associated Non-Coding RNAs.
MA564007 - JP 2018138019-A/135933: Polycomb-Associated Non-Coding RNAs.
MA564008 - JP 2018138019-A/135934: Polycomb-Associated Non-Coding RNAs.
MA564011 - JP 2018138019-A/135937: Polycomb-Associated Non-Coding RNAs.
MA564012 - JP 2018138019-A/135938: Polycomb-Associated Non-Coding RNAs.
MA564013 - JP 2018138019-A/135939: Polycomb-Associated Non-Coding RNAs.
MA564017 - JP 2018138019-A/135943: Polycomb-Associated Non-Coding RNAs.
LF328441 - JP 2014500723-A/135944: Polycomb-Associated Non-Coding RNAs.
LF328442 - JP 2014500723-A/135945: Polycomb-Associated Non-Coding RNAs.
MA564018 - JP 2018138019-A/135944: Polycomb-Associated Non-Coding RNAs.
MA564019 - JP 2018138019-A/135945: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9UHB9 (Reactome details) participates in the following event(s):

R-HSA-1799332 Nascent polypeptide:mRNA:ribosome complex binds signal recognition particle (SRP)
R-HSA-1799326 Signal-containing nascent peptide translocates to endoplasmic reticulum
R-HSA-1799330 The SRP receptor binds the SRP:nascent peptide:ribosome complex
R-HSA-1799339 SRP-dependent cotranslational protein targeting to membrane
R-HSA-72766 Translation
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: B3KUU5, B3KWY7, ENST00000307877.1, ENST00000307877.2, ENST00000307877.3, ENST00000307877.4, ENST00000307877.5, ENST00000307877.6, G3V1U4, NM_014230, Q8NCJ4, Q8WUK2, Q9UHB9, SRP68_HUMAN, uc317oee.1, uc317oee.2
UCSC ID: ENST00000307877.7_8
RefSeq Accession: NM_014230.4
Protein: Q9UHB9 (aka SRP68_HUMAN or SR68_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.