Human Gene STAM (ENST00000377524.8_4) from GENCODE V47lift37
  Description: signal transducing adaptor molecule, transcript variant 1 (from RefSeq NM_003473.4)
Gencode Transcript: ENST00000377524.8_4
Gencode Gene: ENSG00000136738.15_8
Transcript (Including UTRs)
   Position: hg19 chr10:17,686,150-17,758,823 Size: 72,674 Total Exon Count: 14 Strand: +
Coding Region
   Position: hg19 chr10:17,686,339-17,756,779 Size: 70,441 Coding Exon Count: 14 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:17,686,150-17,758,823)mRNA (may differ from genome)Protein (540 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
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MGIOMIMPubMedReactomeUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: STAM1_HUMAN
DESCRIPTION: RecName: Full=Signal transducing adapter molecule 1; Short=STAM-1;
FUNCTION: Involved in intracellular signal transduction mediated by cytokines and growth factors. Upon IL-2 and GM-CSL stimulation, it plays a role in signaling leading to DNA synthesis and MYC induction. May also play a role in T-cell development. Involved in down-regulation of receptor tyrosine kinase via multivesicular body (MVBs) when complexed with HGS (ESCRT-0 complex). The ESCRT-0 complex binds ubiquitin and acts as sorting machinery that recognizes ubiquitinated receptors and transfers them to further sequential lysosomal sorting/trafficking processes.
SUBUNIT: Component of the ESCRT-0 complex composed of STAM or STAM2 and HGS. Probably part of a complex at least composed of HSG, STAM and EPS15. Interacts with STAMBP/AMSH. Interacts with PDGFRB.
INTERACTION: O95630:STAMBP; NbExp=3; IntAct=EBI-752333, EBI-396676;
SUBCELLULAR LOCATION: Cytoplasm (Probable). Early endosome membrane; Peripheral membrane protein; Cytoplasmic side (Probable).
TISSUE SPECIFICITY: Ubiquitously expressed.
PTM: Phosphorylated on Tyr-198. Phosphorylated in response to IL2, IL3, IL4, IL7, CSF2/GM-CSF, EGF and PDGFB. Phosphorylated by activated PDGFRB.
SIMILARITY: Belongs to the STAM family.
SIMILARITY: Contains 1 ITAM domain.
SIMILARITY: Contains 1 SH3 domain.
SIMILARITY: Contains 1 UIM (ubiquitin-interacting motif) repeat.
SIMILARITY: Contains 1 VHS domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 15.04 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 400.97 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -81.20189-0.430 Picture PostScript Text
3' UTR -469.002044-0.229 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR008942 - ENTH_VHS
IPR000108 - p67phox
IPR001452 - SH3_domain
IPR003903 - Ubiquitin-int_motif
IPR002014 - VHS
IPR018205 - VHS_subgr

Pfam Domains:
PF00018 - SH3 domain
PF00790 - VHS domain
PF02809 - Ubiquitin interaction motif
PF07653 - Variant SH3 domain
PF14604 - Variant SH3 domain

SCOP Domains:
48371 - ARM repeat
48464 - ENTH/VHS domain
89009 - GAT-like domain
50044 - SH3-domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2L0A - NMR MuPIT 3F1I - X-ray MuPIT 3LDZ - X-ray


ModBase Predicted Comparative 3D Structure on Q92783
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
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 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005070 SH3/SH2 adaptor activity
GO:0005515 protein binding
GO:0044389 ubiquitin-like protein ligase binding

Biological Process:
GO:0006886 intracellular protein transport
GO:0007165 signal transduction
GO:0009967 positive regulation of signal transduction
GO:0015031 protein transport
GO:0016197 endosomal transport
GO:0016236 macroautophagy
GO:0016579 protein deubiquitination
GO:0036258 multivesicular body assembly
GO:0042059 negative regulation of epidermal growth factor receptor signaling pathway
GO:0061024 membrane organization
GO:1903543 positive regulation of exosomal secretion
GO:1903551 regulation of extracellular exosome assembly

Cellular Component:
GO:0005737 cytoplasm
GO:0005768 endosome
GO:0005829 cytosol
GO:0016020 membrane
GO:0031901 early endosome membrane
GO:0033565 ESCRT-0 complex


-  Descriptions from all associated GenBank mRNAs
  BC030586 - Homo sapiens signal transducing adaptor molecule (SH3 domain and ITAM motif) 1, mRNA (cDNA clone MGC:26363 IMAGE:4820857), complete cds.
AK314405 - Homo sapiens cDNA, FLJ95184, highly similar to Homo sapiens signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 (STAM), mRNA.
AK303083 - Homo sapiens cDNA FLJ57683 complete cds, highly similar to Signal transducing adapter molecule 1.
U43899 - Human signal transducing adaptor molecule STAM mRNA, complete cds.
CU688920 - Synthetic construct Homo sapiens gateway clone IMAGE:100018228 5' read STAM mRNA.
KJ901858 - Synthetic construct Homo sapiens clone ccsbBroadEn_11252 STAM gene, encodes complete protein.
AB590764 - Synthetic construct DNA, clone: pFN21AE1972, Homo sapiens STAM gene for signal transducing adaptor molecule (SH3 domain and ITAM motif) 1, without stop codon, in Flexi system.
JD227475 - Sequence 208499 from Patent EP1572962.
BX647982 - Homo sapiens mRNA; cDNA DKFZp686J2352 (from clone DKFZp686J2352).
AK024383 - Homo sapiens cDNA FLJ14321 fis, clone PLACE3000475.
JD439754 - Sequence 420778 from Patent EP1572962.
JD399987 - Sequence 381011 from Patent EP1572962.
JD510387 - Sequence 491411 from Patent EP1572962.
JD514655 - Sequence 495679 from Patent EP1572962.
JD384513 - Sequence 365537 from Patent EP1572962.
JD246139 - Sequence 227163 from Patent EP1572962.
JD191553 - Sequence 172577 from Patent EP1572962.
JD065490 - Sequence 46514 from Patent EP1572962.
JD411387 - Sequence 392411 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q92783 (Reactome details) participates in the following event(s):

R-HSA-5693061 STAMBP binds STAM
R-HSA-183072 EGFR non-clathrin mediated endocytosis
R-HSA-8867044 EGFR binds EPS15, EPN1, EPS15L1
R-HSA-8875490 EPS15 and HGS bind ubiquitinated MET
R-HSA-8876262 EPS15 and HGS bind CBL-monoubiquitinated MET engaged with Listeria InlB
R-HSA-917730 Cargo Recognition And Sorting
R-HSA-182986 CBL-mediated ubiquitination of CIN85
R-HSA-182990 Sprouty sequesters CBL away from active EGFR
R-HSA-8867041 EGFR phosphorylates EPS15
R-HSA-8867047 PTPN3 dephosphorylates EPS15
R-HSA-8866279 Epsin family proteins bind ubiquitinated cargo
R-HSA-8867756 CLASP proteins and cargo are recruited to the nascent clathrin-coated pit
R-HSA-8868071 Clathrin recruits PIK3C2A
R-HSA-8868661 Dynamin-mediated GTP hydrolysis promotes vesicle scission
R-HSA-8868648 SYNJ hydrolyze PI(4,5)P2 to PI(4)P
R-HSA-8871194 RAB5 and GAPVD1 bind AP-2
R-HSA-8868658 HSPA8-mediated ATP hydrolysis promotes vesicle uncoating
R-HSA-8868659 Clathrin recruits auxilins to the clathrin-coated vesicle
R-HSA-8868660 Auxilin recruits HSPA8:ATP to the clathrin-coated vesicle
R-HSA-8867754 F- and N- BAR domain proteins bind the clathrin-coated pit
R-HSA-8868230 SNX9 recruits components of the actin polymerizing machinery
R-HSA-8868072 Clathrin-associated PIK3C2A phosphorylates PI(4)P to PI(3,4)P2
R-HSA-8868236 BAR domain proteins recruit dynamin
R-HSA-8868651 Endophilins recruit synaptojanins to the clathrin-coated pit
R-HSA-5689901 Metalloprotease DUBs
R-HSA-5688426 Deubiquitination
R-HSA-182971 EGFR downregulation
R-HSA-6807004 Negative regulation of MET activity
R-HSA-8875360 InlB-mediated entry of Listeria monocytogenes into host cell
R-HSA-917729 Endosomal Sorting Complex Required For Transport (ESCRT)
R-HSA-597592 Post-translational protein modification
R-HSA-177929 Signaling by EGFR
R-HSA-6806834 Signaling by MET
R-HSA-8876384 Listeria monocytogenes entry into host cells
R-HSA-199991 Membrane Trafficking
R-HSA-392499 Metabolism of proteins
R-HSA-9006934 Signaling by Receptor Tyrosine Kinases
R-HSA-5663205 Infectious disease
R-HSA-5653656 Vesicle-mediated transport
R-HSA-8856825 Cargo recognition for clathrin-mediated endocytosis
R-HSA-162582 Signal Transduction
R-HSA-1643685 Disease
R-HSA-8856828 Clathrin-mediated endocytosis

-  Other Names for This Gene
  Alternate Gene Symbols: B0YJ99, D3DRU5, ENST00000377524.1, ENST00000377524.2, ENST00000377524.3, ENST00000377524.4, ENST00000377524.5, ENST00000377524.6, ENST00000377524.7, NM_003473, Q8N6D9, Q92783, STAM1, STAM1_HUMAN, uc318nrh.1, uc318nrh.2
UCSC ID: ENST00000377524.8_4
RefSeq Accession: NM_003473.4
Protein: Q92783 (aka STAM1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.