Human Gene STAP2 (ENST00000594605.6_7) from GENCODE V47lift37
  Description: signal transducing adaptor family member 2, transcript variant 2 (from RefSeq NM_001013841.2)
Gencode Transcript: ENST00000594605.6_7
Gencode Gene: ENSG00000178078.12_13
Transcript (Including UTRs)
   Position: hg19 chr19:4,324,040-4,338,824 Size: 14,785 Total Exon Count: 13 Strand: -
Coding Region
   Position: hg19 chr19:4,324,130-4,338,750 Size: 14,621 Coding Exon Count: 13 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:4,324,040-4,338,824)mRNA (may differ from genome)Protein (403 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: STAP2_HUMAN
DESCRIPTION: RecName: Full=Signal-transducing adaptor protein 2; Short=STAP-2; AltName: Full=Breast tumor kinase substrate; Short=BRK substrate;
FUNCTION: Substrate of protein kinase PTK6. May play a regulatory role in the acute-phase response in systemic inflammation and may modulate STAT3 activity.
SUBUNIT: Interacts with PTK6 and CSF1R.
INTERACTION: O14920:IKBKB; NbExp=7; IntAct=EBI-1553984, EBI-81266; Q99836:MYD88; NbExp=3; IntAct=EBI-1553984, EBI-447677;
SUBCELLULAR LOCATION: Cytoplasm.
TISSUE SPECIFICITY: Widely expressed.
PTM: Phosphorylated on tyrosine. Tyr-250 may be important for interaction with kinases. Phosphorylated by PTK6 at Tyr-250 modulates PTK6-mediated STAT3 activation. Tyr-22 and Tyr-322 appears to be phosphorylated by SRC.
SIMILARITY: Contains 1 PH domain.
SIMILARITY: Contains 1 SH2 domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 44.48 RPKM in Colon - Transverse
Total median expression: 397.74 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -28.5074-0.385 Picture PostScript Text
3' UTR -27.2090-0.302 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011993 - PH_like_dom
IPR001849 - Pleckstrin_homology
IPR000980 - SH2

SCOP Domains:
50729 - PH domain-like
55550 - SH2 domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2EL8 - NMR MuPIT


ModBase Predicted Comparative 3D Structure on Q9UGK3
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0042531 positive regulation of tyrosine phosphorylation of STAT protein

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005886 plasma membrane


-  Descriptions from all associated GenBank mRNAs
  BC000795 - Homo sapiens signal transducing adaptor family member 2, mRNA (cDNA clone MGC:4988 IMAGE:3451782), complete cds.
AK000241 - Homo sapiens cDNA FLJ20234 fis, clone COLF5673.
AK125774 - Homo sapiens cDNA FLJ43786 fis, clone TESTI2052693, highly similar to Brk kinase substrate.
AJ245719 - Homo sapiens mRNA for brk kinase substrate (BKS gene).
KJ899159 - Synthetic construct Homo sapiens clone ccsbBroadEn_08553 STAP2 gene, encodes complete protein.
AB527779 - Synthetic construct DNA, clone: pF1KB5841, Homo sapiens STAP2 gene for signal transducing adaptor family member 2, without stop codon, in Flexi system.
JD062290 - Sequence 43314 from Patent EP1572962.
JD141270 - Sequence 122294 from Patent EP1572962.
JD320764 - Sequence 301788 from Patent EP1572962.
JD387368 - Sequence 368392 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9UGK3 (Reactome details) participates in the following event(s):

R-HSA-8848023 Activated PTK6 binds STAP2
R-HSA-8848077 PTK6 phosphorylates STAP2
R-HSA-8848087 STAP2 recruits STAT3 to PTK6
R-HSA-8848124 PTK6 phosphorylates STAT3
R-HSA-8849474 PTK6 Activates STAT3
R-HSA-8848021 Signaling by PTK6
R-HSA-9006927 Signaling by Non-Receptor Tyrosine Kinases
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: A6NKK3, BKS, ENST00000594605.1, ENST00000594605.2, ENST00000594605.3, ENST00000594605.4, ENST00000594605.5, NM_001013841, Q9NXI2, Q9UGK3, STAP2_HUMAN, uc326zuw.1, uc326zuw.2
UCSC ID: ENST00000594605.6_7
RefSeq Accession: NM_001013841.2
Protein: Q9UGK3 (aka STAP2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.