Human Gene STIP1 (ENST00000305218.9_5) from GENCODE V47lift37
  Description: stress induced phosphoprotein 1, transcript variant 2 (from RefSeq NM_006819.3)
Gencode Transcript: ENST00000305218.9_5
Gencode Gene: ENSG00000168439.17_6
Transcript (Including UTRs)
   Position: hg19 chr11:63,953,643-63,972,015 Size: 18,373 Total Exon Count: 14 Strand: +
Coding Region
   Position: hg19 chr11:63,953,734-63,971,598 Size: 17,865 Coding Exon Count: 14 

Page IndexSequence and LinksPrimersCTDGene AllelesRNA-Seq Expression
Microarray ExpressionRNA StructureOther SpeciesmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:63,953,643-63,972,015)mRNA (may differ from genome)Protein (543 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedUniProtKBWikipedia
BioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 82.95 RPKM in Testis
Total median expression: 1431.28 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -40.8091-0.448 Picture PostScript Text
3' UTR -145.80417-0.350 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologGenome Browser
Gene DetailsGene Details   Gene Details
Gene SorterGene Sorter   Gene Sorter
 RGDEnsembl  SGD
     Protein Sequence
     Alignment

-  Descriptions from all associated GenBank mRNAs
  DQ893295 - Synthetic construct clone IMAGE:100005925; FLH199489.01X; RZPDo839D0982D stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing protein) (STIP1) gene, encodes complete protein.
EU176746 - Synthetic construct Homo sapiens clone IMAGE:100011564; FLH197009.01L; RZPDo839C01256D stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing protein) (STIP1) gene, encodes complete protein.
BC039299 - Homo sapiens stress-induced-phosphoprotein 1, mRNA (cDNA clone MGC:39562 IMAGE:4830381), complete cds.
AK291555 - Homo sapiens cDNA FLJ76863 complete cds, highly similar to Homo sapiens stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing protein) (STIP1), mRNA.
BC002987 - Homo sapiens stress-induced-phosphoprotein 1, mRNA (cDNA clone MGC:3516 IMAGE:2823157), complete cds.
FJ224350 - Homo sapiens epididymis secretory sperm binding protein Li 94n (HEL-S-94n) mRNA, complete cds.
M86752 - Human transformation-sensitive protein (IEF SSP 3521) mRNA, complete cds.
AK297319 - Homo sapiens cDNA FLJ54451 complete cds, highly similar to Stress-induced-phosphoprotein 1.
AK225736 - Homo sapiens mRNA for stress-induced-phosphoprotein 1 variant, clone: TST08027.
CU678328 - Synthetic construct Homo sapiens gateway clone IMAGE:100020289 5' read STIP1 mRNA.
AB385013 - Synthetic construct DNA, clone: pF1KB5012, Homo sapiens STIP1 gene for stress-induced-phosphoprotein 1, complete cds, without stop codon, in Flexi system.
BT020010 - Homo sapiens stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing protein) mRNA, complete cds.
BT020011 - Homo sapiens stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing protein) mRNA, complete cds.
KJ893183 - Synthetic construct Homo sapiens clone ccsbBroadEn_02577 STIP1 gene, encodes complete protein.
CR536512 - Homo sapiens full open reading frame cDNA clone RZPDo834C0722D for gene STIP1, stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing protein); complete cds, incl. stopcodon.
GQ891364 - Homo sapiens clone HEL-S-152l epididymis secretory sperm binding protein mRNA, complete cds.
JD539027 - Sequence 520051 from Patent EP1572962.
JD178272 - Sequence 159296 from Patent EP1572962.
JD067799 - Sequence 48823 from Patent EP1572962.
JD452329 - Sequence 433353 from Patent EP1572962.
JD141628 - Sequence 122652 from Patent EP1572962.
JD271302 - Sequence 252326 from Patent EP1572962.
JD458586 - Sequence 439610 from Patent EP1572962.
JD129866 - Sequence 110890 from Patent EP1572962.
JD404987 - Sequence 386011 from Patent EP1572962.
JD262724 - Sequence 243748 from Patent EP1572962.
JD489706 - Sequence 470730 from Patent EP1572962.
JD554135 - Sequence 535159 from Patent EP1572962.
JD147748 - Sequence 128772 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000305218.1, ENST00000305218.2, ENST00000305218.3, ENST00000305218.4, ENST00000305218.5, ENST00000305218.6, ENST00000305218.7, ENST00000305218.8, HEL-S-94n , NM_006819, uc317npd.1, uc317npd.2, V9HW72, V9HW72_HUMAN
UCSC ID: ENST00000305218.9_5
RefSeq Accession: NM_006819.3

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.