Human Gene STK24 (ENST00000539966.6_8) from GENCODE V47lift37
  Description: serine/threonine kinase 24, transcript variant 2 (from RefSeq NM_001032296.4)
Gencode Transcript: ENST00000539966.6_8
Gencode Gene: ENSG00000102572.15_16
Transcript (Including UTRs)
   Position: hg19 chr13:99,097,439-99,229,361 Size: 131,923 Total Exon Count: 11 Strand: -
Coding Region
   Position: hg19 chr13:99,105,427-99,229,040 Size: 123,614 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr13:99,097,439-99,229,361)mRNA (may differ from genome)Protein (431 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: STK24_HUMAN
DESCRIPTION: RecName: Full=Serine/threonine-protein kinase 24; EC=2.7.11.1; AltName: Full=Mammalian STE20-like protein kinase 3; Short=MST-3; AltName: Full=STE20-like kinase MST3; Contains: RecName: Full=Serine/threonine-protein kinase 24 36 kDa subunit; AltName: Full=Mammalian STE20-like protein kinase 3 N-terminal; Short=MST3/N; Contains: RecName: Full=Serine/threonine-protein kinase 24 12 kDa subunit; AltName: Full=Mammalian STE20-like protein kinase 3 C-terminal; Short=MST3/C;
FUNCTION: Serine/threonine-protein kinase that acts on both serine and threonine residues and promotes apoptosis in response to stress stimuli and caspase activation. Mediates oxidative-stress- induced cell death by modulating phosphorylation of JNK1-JNK2 (MAPK8 and MAPK9), p38 (MAPK11, MAPK12, MAPK13 and MAPK14) during oxidative stress. Plays a role in a staurosporine-induced caspase- independent apoptotic pathway by regulating the nuclear translocation of AIFM1 and ENDOG and the DNase activity associated with ENDOG. Phosphorylates STK38L on 'Thr-442' and stimulates its kinase activity. Regulates cellular migration with alteration of PTPN12 activity and PXN phosphorylation: phosphorylates PTPN12 and inhibits its activity and may regulate PXN phosphorylation through PTPN12. May act as a key regulator of axon regeneration in the optic nerve and radial nerve.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
COFACTOR: Magnesium, manganese, cobalt and zinc.
BIOPHYSICOCHEMICAL PROPERTIES: Kinetic parameters: KM=12.8 uM for manganese ions; KM=34.9 uM for cobalt ions; KM=22.7 uM for magnesium ions; KM=4.1 uM for zinc ions; Vmax=2623.1 pmol/min/mg enzyme for manganese ions; Vmax=1746.1 pmol/min/mg enzyme for cobalt ions; Vmax=129.1 pmol/min/mg enzyme for magnesium ions; Vmax=22.3 pmol/min/mg enzyme for zinc ions;
SUBUNIT: Monomer.
INTERACTION: Q9P2B4:CTTNBP2NL; NbExp=3; IntAct=EBI-740175, EBI-1774273; Q9BUL8:PDCD10; NbExp=4; IntAct=EBI-740175, EBI-740195; O43815:STRN; NbExp=2; IntAct=EBI-740175, EBI-1046642; Q9Y228:TRAF3IP3; NbExp=2; IntAct=EBI-740175, EBI-765817;
SUBCELLULAR LOCATION: Cytoplasm. Nucleus. Membrane. Note=The truncated form (MST3/N) translocates to the nucleus. Co-localizes with STK38L in the membrane.
TISSUE SPECIFICITY: Isoform A is ubiquitous. Isoform B is expressed in brain with high expression in hippocampus and cerebral cortex.
PTM: Proteolytically processed by caspases during apoptosis. Proteolytic cleavage results in kinase activation, nuclear translocation of the truncated form (MST3/N) and the induction of apoptosis.
PTM: Isoform B is activated by phosphorylation by PKA. Oxidative stress induces phosphorylation. Activated by autophosphorylation at Thr-190 and phosphorylation at this site is essential for its function. Manganese, magnesium and cobalt-dependent autophosphorylation is mainly on threonine residues while zinc- dependent autophosphorylation is on both serine and threonine residues.
SIMILARITY: Belongs to the protein kinase superfamily. STE Ser/Thr protein kinase family. STE20 subfamily.
SIMILARITY: Contains 1 protein kinase domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: STK24
Diseases sorted by gene-association score: cerebral cavernous malformations-2 (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 48.01 RPKM in Skin - Sun Exposed (Lower leg)
Total median expression: 919.18 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -185.50321-0.578 Picture PostScript Text
3' UTR -2860.807988-0.358 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom

Pfam Domains:
PF00069 - Protein kinase domain
PF07714 - Protein tyrosine and serine/threonine kinase

SCOP Domains:
56112 - Protein kinase-like (PK-like)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3A7F - X-ray MuPIT 3A7G - X-ray MuPIT 3A7H - X-ray MuPIT 3A7I - X-ray MuPIT 3A7J - X-ray MuPIT 3CKW - X-ray MuPIT 3CKX - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q9Y6E0
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0008349 MAP kinase kinase kinase kinase activity
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0045296 cadherin binding
GO:0046872 metal ion binding

Biological Process:
GO:0000165 MAPK cascade
GO:0000185 activation of MAPKKK activity
GO:0006468 protein phosphorylation
GO:0006915 apoptotic process
GO:0007165 signal transduction
GO:0007346 regulation of mitotic cell cycle
GO:0008631 intrinsic apoptotic signaling pathway in response to oxidative stress
GO:0009267 cellular response to starvation
GO:0016310 phosphorylation
GO:0030336 negative regulation of cell migration
GO:0031098 stress-activated protein kinase signaling cascade
GO:0042542 response to hydrogen peroxide
GO:0042981 regulation of apoptotic process
GO:0046777 protein autophosphorylation
GO:0048679 regulation of axon regeneration
GO:0048812 neuron projection morphogenesis
GO:0097194 execution phase of apoptosis

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005794 Golgi apparatus
GO:0005829 cytosol
GO:0016020 membrane
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  EU668350 - Homo sapiens epididymis secretory protein Li 95 (HEL-S-95) mRNA, complete cds.
LF385021 - JP 2014500723-A/192524: Polycomb-Associated Non-Coding RNAs.
BC035578 - Homo sapiens serine/threonine kinase 24 (STE20 homolog, yeast), mRNA (cDNA clone MGC:45338 IMAGE:5539375), complete cds.
BC065378 - Homo sapiens serine/threonine kinase 24 (STE20 homolog, yeast), mRNA (cDNA clone MGC:71165 IMAGE:6598075), complete cds.
AF024636 - Homo sapiens STE20-like kinase 3 (mst-3) mRNA, complete cds.
AK297583 - Homo sapiens cDNA FLJ60706 complete cds, highly similar to Serine/threonine-protein kinase 24 (EC 2.7.11.1).
AK299140 - Homo sapiens cDNA FLJ61159 complete cds, highly similar to Serine/threonine-protein kinase 24 (EC 2.7.11.1).
KJ897844 - Synthetic construct Homo sapiens clone ccsbBroadEn_07238 STK24 gene, encodes complete protein.
KJ905348 - Synthetic construct Homo sapiens clone ccsbBroadEn_14893 STK24 gene, encodes complete protein.
BT019619 - Homo sapiens serine/threonine kinase 24 (STE20 homolog, yeast) mRNA, complete cds.
DQ890912 - Synthetic construct clone IMAGE:100003542; FLH167038.01X; RZPDo839G0688D serine/threonine kinase 24 (STE20 homolog, yeast) (STK24) gene, encodes complete protein.
CR542227 - Homo sapiens full open reading frame cDNA clone RZPDo834E0225D for gene STK24, serine/threonine kinase 24 (STE20 homolog, yeast); complete cds, without stopcodon.
AB590338 - Synthetic construct DNA, clone: pFN21AE1320, Homo sapiens STK24 gene for serine/threonine kinase 24, without stop codon, in Flexi system.
CU690112 - Synthetic construct Homo sapiens gateway clone IMAGE:100019365 5' read STK24 mRNA.
MA620598 - JP 2018138019-A/192524: Polycomb-Associated Non-Coding RNAs.
JD441216 - Sequence 422240 from Patent EP1572962.
JD265997 - Sequence 247021 from Patent EP1572962.
AF083420 - Homo sapiens brain-specific STE20-like protein kinase 3 (STK3) mRNA, complete cds.
JD316569 - Sequence 297593 from Patent EP1572962.
LF335696 - JP 2014500723-A/143199: Polycomb-Associated Non-Coding RNAs.
JD232146 - Sequence 213170 from Patent EP1572962.
JD083032 - Sequence 64056 from Patent EP1572962.
LF335697 - JP 2014500723-A/143200: Polycomb-Associated Non-Coding RNAs.
JD204595 - Sequence 185619 from Patent EP1572962.
AK300060 - Homo sapiens cDNA FLJ61383 complete cds, highly similar to Serine/threonine-protein kinase 24 (EC 2.7.11.1).
JD044666 - Sequence 25690 from Patent EP1572962.
JD296527 - Sequence 277551 from Patent EP1572962.
JD437557 - Sequence 418581 from Patent EP1572962.
JD214850 - Sequence 195874 from Patent EP1572962.
JD334386 - Sequence 315410 from Patent EP1572962.
LF335698 - JP 2014500723-A/143201: Polycomb-Associated Non-Coding RNAs.
JD231870 - Sequence 212894 from Patent EP1572962.
AF339826 - Homo sapiens clone IMAGE:502397, mRNA sequence.
LF335699 - JP 2014500723-A/143202: Polycomb-Associated Non-Coding RNAs.
LF335700 - JP 2014500723-A/143203: Polycomb-Associated Non-Coding RNAs.
LF335703 - JP 2014500723-A/143206: Polycomb-Associated Non-Coding RNAs.
LF335704 - JP 2014500723-A/143207: Polycomb-Associated Non-Coding RNAs.
LF335708 - JP 2014500723-A/143211: Polycomb-Associated Non-Coding RNAs.
LF335709 - JP 2014500723-A/143212: Polycomb-Associated Non-Coding RNAs.
LF335716 - JP 2014500723-A/143219: Polycomb-Associated Non-Coding RNAs.
MA571273 - JP 2018138019-A/143199: Polycomb-Associated Non-Coding RNAs.
MA571274 - JP 2018138019-A/143200: Polycomb-Associated Non-Coding RNAs.
MA571275 - JP 2018138019-A/143201: Polycomb-Associated Non-Coding RNAs.
MA571276 - JP 2018138019-A/143202: Polycomb-Associated Non-Coding RNAs.
MA571277 - JP 2018138019-A/143203: Polycomb-Associated Non-Coding RNAs.
MA571280 - JP 2018138019-A/143206: Polycomb-Associated Non-Coding RNAs.
MA571281 - JP 2018138019-A/143207: Polycomb-Associated Non-Coding RNAs.
MA571285 - JP 2018138019-A/143211: Polycomb-Associated Non-Coding RNAs.
MA571286 - JP 2018138019-A/143212: Polycomb-Associated Non-Coding RNAs.
MA571293 - JP 2018138019-A/143219: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9Y6E0 (Reactome details) participates in the following event(s):

R-HSA-351901 Caspase-mediated cleavage of MST3
R-HSA-351947 Nuclear translocation of catalytic domain of Mst3
R-HSA-111465 Apoptotic cleavage of cellular proteins
R-HSA-75153 Apoptotic execution phase
R-HSA-109581 Apoptosis
R-HSA-5357801 Programmed Cell Death

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000539966.1, ENST00000539966.2, ENST00000539966.3, ENST00000539966.4, ENST00000539966.5, MST3, NM_001032296, O14840, Q5JV92, Q9Y6E0, STK24_HUMAN, STK3, uc324rtx.1, uc324rtx.2
UCSC ID: ENST00000539966.6_8
RefSeq Accession: NM_001032296.4
Protein: Q9Y6E0 (aka STK24_HUMAN or ST24_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.