Human Gene STK33 (ENST00000687296.1_3) from GENCODE V47lift37
  Description: serine/threonine kinase 33, transcript variant 10 (from RefSeq NM_001352392.2)
Gencode Transcript: ENST00000687296.1_3
Gencode Gene: ENSG00000130413.16_19
Transcript (Including UTRs)
   Position: hg19 chr11:8,413,417-8,615,775 Size: 202,359 Total Exon Count: 16 Strand: -
Coding Region
   Position: hg19 chr11:8,414,057-8,496,452 Size: 82,396 Coding Exon Count: 12 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther Names
Model InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:8,413,417-8,615,775)mRNA (may differ from genome)Protein (514 aa)
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HGNCMGIOMIMPubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: STK33_HUMAN
DESCRIPTION: RecName: Full=Serine/threonine-protein kinase 33; EC=2.7.11.1;
FUNCTION: Serine/threonine protein kinase which phosphorylates VIME. May play a specific role in the dynamic behavior of the intermediate filament cytoskeleton by phosphorylation of VIME (By similarity). Not essential for the survival of KRAS-dependent AML cell lines.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
SUBUNIT: Interacts with VIME (By similarity).
SUBCELLULAR LOCATION: Cytoplasm, perinuclear region (By similarity).
TISSUE SPECIFICITY: Highly expressed in testis, fetal lung and heart, followed by pituitary gland, kidney, interventricular septum, pancreas, heart, trachea, thyroid gland and uterus. Weak hybridization signals were observed in the following tissues: amygdala, aorta, esophagus, colon ascending, colon transverse, skeletal muscle, spleen, peripheral blood leukocyte, lymph node, bone marrow, placenta, prostate, liver, salivary gland, mammary gland, some tumor cell lines, fetal brain, fetal liver, fetal spleen and fetal thymus. No signal at all was detectable in RNA from tissues of the nervous system.
PTM: Autophosphorylated (By similarity).
SIMILARITY: Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. CaMK subfamily.
SIMILARITY: Contains 1 protein kinase domain.

-  Primer design for this transcript
 

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Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -178.67611-0.292 Picture PostScript Text
3' UTR -165.60640-0.259 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR020636 - Ca/CaM-dep_Ca-dep_prot_Kinase
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF06293 - Lipopolysaccharide kinase (Kdo/WaaP) family
PF07714 - Protein tyrosine and serine/threonine kinase

SCOP Domains:
56112 - Protein kinase-like (PK-like)

ModBase Predicted Comparative 3D Structure on Q9BYT3
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity

Biological Process:
GO:0006468 protein phosphorylation
GO:0016310 phosphorylation
GO:0018105 peptidyl-serine phosphorylation
GO:0018107 peptidyl-threonine phosphorylation
GO:0035556 intracellular signal transduction
GO:0046777 protein autophosphorylation

Cellular Component:
GO:0005622 intracellular
GO:0005737 cytoplasm
GO:0048471 perinuclear region of cytoplasm


-  Descriptions from all associated GenBank mRNAs
  AK092720 - Homo sapiens cDNA FLJ35401 fis, clone SKNSH2005792, highly similar to Serine/threonine-protein kinase 33 (EC2.7.11.1).
AX747689 - Sequence 1214 from Patent EP1308459.
AK093251 - Homo sapiens cDNA FLJ35932 fis, clone TESTI2011286, weakly similar to MYOSIN LIGHT CHAIN KINASE (EC 2.7.1.117).
AX748014 - Sequence 1539 from Patent EP1308459.
BC031231 - Homo sapiens serine/threonine kinase 33, mRNA (cDNA clone MGC:39551 IMAGE:5296502), complete cds.
AK293193 - Homo sapiens cDNA FLJ58445 complete cds, highly similar to Serine/threonine-protein kinase 33 (EC 2.7.11.1).
AK310754 - Homo sapiens cDNA, FLJ17796.
AJ303380 - Homo sapiens mRNA for serine/threonine kinase 33 (STK33 gene).
AK122808 - Homo sapiens cDNA FLJ16397 fis, clone TRACH3000043, highly similar to Homo sapiens mRNA for serine/threonine kinase 33.
AL833011 - Homo sapiens mRNA; cDNA DKFZp666M234 (from clone DKFZp666M234).
JD429782 - Sequence 410806 from Patent EP1572962.
JD292058 - Sequence 273082 from Patent EP1572962.
JD167331 - Sequence 148355 from Patent EP1572962.
JD539709 - Sequence 520733 from Patent EP1572962.
DQ891517 - Synthetic construct clone IMAGE:100004147; FLH177653.01X; RZPDo839C07126D serine/threonine kinase 33 (STK33) gene, encodes complete protein.
KJ903124 - Synthetic construct Homo sapiens clone ccsbBroadEn_12518 STK33 gene, encodes complete protein.
KJ905531 - Synthetic construct Homo sapiens clone ccsbBroadEn_15143 STK33 gene, encodes complete protein.
EU176614 - Synthetic construct Homo sapiens clone IMAGE:100011407; FLH177652.01L; RZPDo839E05254D serine/threonine kinase 33 (STK33) gene, encodes complete protein.
AB528005 - Synthetic construct DNA, clone: pF1KE0778, Homo sapiens STK33 gene for serine/threonine kinase 33, without stop codon, in Flexi system.
CU689122 - Synthetic construct Homo sapiens gateway clone IMAGE:100019746 5' read STK33 mRNA.
JD305490 - Sequence 286514 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NM_001352392, Q658S6, Q8NEF5, Q9BYT3, STK33_HUMAN, uc330qqc.1, uc330qqc.2
UCSC ID: ENST00000687296.1_3
RefSeq Accession: NM_001352389.2
Protein: Q9BYT3 (aka STK33_HUMAN)

-  Gene Model Information
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-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.