Human Gene STK38 (ENST00000229812.8_7) from GENCODE V47lift37
  Description: serine/threonine kinase 38, transcript variant 1 (from RefSeq NM_007271.4)
Gencode Transcript: ENST00000229812.8_7
Gencode Gene: ENSG00000112079.9_10
Transcript (Including UTRs)
   Position: hg19 chr6:36,461,669-36,515,256 Size: 53,588 Total Exon Count: 14 Strand: -
Coding Region
   Position: hg19 chr6:36,463,561-36,507,979 Size: 44,419 Coding Exon Count: 13 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:36,461,669-36,515,256)mRNA (may differ from genome)Protein (465 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: STK38_HUMAN
DESCRIPTION: RecName: Full=Serine/threonine-protein kinase 38; EC=2.7.11.1; AltName: Full=NDR1 protein kinase; AltName: Full=Nuclear Dbf2-related kinase 1;
FUNCTION: Negative regulator of MAP3K1/2 signaling. Converts MAP3K2 from its phosphorylated form to its non-phosphorylated form and inhibits autophosphorylation of MAP3K2.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
COFACTOR: Magnesium.
ENZYME REGULATION: Activated by binding of S100B which releases autoinhibitory N-lobe interactions, enabling ATP to bind and the autophosphorylation of Ser-281. Thr-444 then undergoes calcium- dependent phosphorylation by STK24/MST3. Interactions between phosphorylated Thr-444 and the N-lobe promote additional structural changes that complete the activation of the kinase. Autoinhibition is also released by the binding of MOB1/MOBKL1A and MOB2/HCCA2 to the N-terminal of STK38.
SUBUNIT: Interacts with MICAL1; leading to inhibit the protein kinase activity by antagonizing activation by MST1/STK4 (By similarity). Homodimeric S100B binds two molecules of STK38. Component of the MLL5-L complex, at least composed of MLL5, STK38, PPP1CA, PPP1CB, PPP1CC, HCFC1, ACTB and OGT. Interacts with MOB1 and MOB2. Interacts with MAP3K1 and MAP3K2 (via the kinase catalytic domain). Forms a tripartite complex with MOBKL1B and STK3/MST2.
INTERACTION: P49407:ARRB1; NbExp=3; IntAct=EBI-458376, EBI-743313; P32121:ARRB2; NbExp=3; IntAct=EBI-458376, EBI-714559; Q9H8S9:MOB1A; NbExp=2; IntAct=EBI-458376, EBI-748229; P02638:S100B (xeno); NbExp=3; IntAct=EBI-458376, EBI-458452;
SUBCELLULAR LOCATION: Nucleus. Cytoplasm.
TISSUE SPECIFICITY: Ubiquitously expressed with highest levels observed in peripheral blood leukocytes.
PTM: ISGylated (Probable).
PTM: Phosphorylated by STK3/MST2 and this is enhanced by MOBKL1B.
SIMILARITY: Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.
SIMILARITY: Contains 1 AGC-kinase C-terminal domain.
SIMILARITY: Contains 1 protein kinase domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 41.59 RPKM in Whole Blood
Total median expression: 883.05 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -113.80295-0.386 Picture PostScript Text
3' UTR -544.801892-0.288 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000961 - AGC-kinase_C
IPR011009 - Kinase-like_dom
IPR017892 - Pkinase_C
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF00433 - Protein kinase C terminal domain
PF03109 - ABC1 atypical kinase-like domain
PF07714 - Protein tyrosine and serine/threonine kinase

SCOP Domains:
56112 - Protein kinase-like (PK-like)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1PSB - NMR


ModBase Predicted Comparative 3D Structure on Q15208
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0000287 magnesium ion binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0031435 mitogen-activated protein kinase kinase kinase binding
GO:0045296 cadherin binding
GO:0046872 metal ion binding

Biological Process:
GO:0006464 cellular protein modification process
GO:0006468 protein phosphorylation
GO:0016310 phosphorylation
GO:0018105 peptidyl-serine phosphorylation
GO:0035556 intracellular signal transduction
GO:0043407 negative regulation of MAP kinase activity

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  LF340943 - JP 2014500723-A/148446: Polycomb-Associated Non-Coding RNAs.
BC012085 - Homo sapiens serine/threonine kinase 38, mRNA (cDNA clone MGC:20014 IMAGE:4554884), complete cds.
LF385177 - JP 2014500723-A/192680: Polycomb-Associated Non-Coding RNAs.
BC095413 - Homo sapiens serine/threonine kinase 38, mRNA (cDNA clone MGC:110916 IMAGE:30337276), complete cds.
LF340944 - JP 2014500723-A/148447: Polycomb-Associated Non-Coding RNAs.
JD231629 - Sequence 212653 from Patent EP1572962.
JD551078 - Sequence 532102 from Patent EP1572962.
JD335053 - Sequence 316077 from Patent EP1572962.
JD467797 - Sequence 448821 from Patent EP1572962.
JD563448 - Sequence 544472 from Patent EP1572962.
JD259583 - Sequence 240607 from Patent EP1572962.
JD544871 - Sequence 525895 from Patent EP1572962.
JD552139 - Sequence 533163 from Patent EP1572962.
JD227693 - Sequence 208717 from Patent EP1572962.
JD259412 - Sequence 240436 from Patent EP1572962.
Z35102 - H.sapiens mRNA for Ndr protein kinase.
JD040902 - Sequence 21926 from Patent EP1572962.
JD401421 - Sequence 382445 from Patent EP1572962.
JD372223 - Sequence 353247 from Patent EP1572962.
JD433256 - Sequence 414280 from Patent EP1572962.
JD122753 - Sequence 103777 from Patent EP1572962.
JD258304 - Sequence 239328 from Patent EP1572962.
JD370449 - Sequence 351473 from Patent EP1572962.
JD228256 - Sequence 209280 from Patent EP1572962.
JD280207 - Sequence 261231 from Patent EP1572962.
LF340945 - JP 2014500723-A/148448: Polycomb-Associated Non-Coding RNAs.
JD040042 - Sequence 21066 from Patent EP1572962.
LF340946 - JP 2014500723-A/148449: Polycomb-Associated Non-Coding RNAs.
JD090586 - Sequence 71610 from Patent EP1572962.
JD111233 - Sequence 92257 from Patent EP1572962.
JD189620 - Sequence 170644 from Patent EP1572962.
AK312559 - Homo sapiens cDNA, FLJ92932, highly similar to Homo sapiens serine/threonine kinase 38 (STK38), mRNA.
KJ893280 - Synthetic construct Homo sapiens clone ccsbBroadEn_02674 STK38 gene, encodes complete protein.
KJ905418 - Synthetic construct Homo sapiens clone ccsbBroadEn_14993 STK38 gene, encodes complete protein.
AB384399 - Synthetic construct DNA, clone: pF1KSDB1453, Homo sapiens STK38 gene for serine/threonine-protein kinase 38, complete cds, without stop codon, in Flexi system.
EU832099 - Synthetic construct Homo sapiens clone HAIB:100067128; DKFZo008A1225 serine/threonine kinase 38 protein (STK38) gene, encodes complete protein.
EU832192 - Synthetic construct Homo sapiens clone HAIB:100067221; DKFZo004A1226 serine/threonine kinase 38 protein (STK38) gene, encodes complete protein.
AK095337 - Homo sapiens cDNA FLJ38018 fis, clone CTONG2012745, weakly similar to H.sapiens mRNA for Ndr protein kinase.
LF340947 - JP 2014500723-A/148450: Polycomb-Associated Non-Coding RNAs.
LF340948 - JP 2014500723-A/148451: Polycomb-Associated Non-Coding RNAs.
LF340949 - JP 2014500723-A/148452: Polycomb-Associated Non-Coding RNAs.
CU680210 - Synthetic construct Homo sapiens gateway clone IMAGE:100019526 5' read STK38 mRNA.
AF034187 - Homo sapiens clone 2.2H12 Ndr Ser/Thr kinase-like protein mRNA, partial cds.
LF340950 - JP 2014500723-A/148453: Polycomb-Associated Non-Coding RNAs.
AF034188 - Homo sapiens clone 3.1E3 Ndr Ser/Thr kinase-like protein mRNA, partial cds.
LF340952 - JP 2014500723-A/148455: Polycomb-Associated Non-Coding RNAs.
LF340953 - JP 2014500723-A/148456: Polycomb-Associated Non-Coding RNAs.
LF340957 - JP 2014500723-A/148460: Polycomb-Associated Non-Coding RNAs.
MA620754 - JP 2018138019-A/192680: Polycomb-Associated Non-Coding RNAs.
MA576520 - JP 2018138019-A/148446: Polycomb-Associated Non-Coding RNAs.
MA576521 - JP 2018138019-A/148447: Polycomb-Associated Non-Coding RNAs.
MA576522 - JP 2018138019-A/148448: Polycomb-Associated Non-Coding RNAs.
MA576523 - JP 2018138019-A/148449: Polycomb-Associated Non-Coding RNAs.
MA576524 - JP 2018138019-A/148450: Polycomb-Associated Non-Coding RNAs.
MA576525 - JP 2018138019-A/148451: Polycomb-Associated Non-Coding RNAs.
MA576526 - JP 2018138019-A/148452: Polycomb-Associated Non-Coding RNAs.
MA576527 - JP 2018138019-A/148453: Polycomb-Associated Non-Coding RNAs.
MA576529 - JP 2018138019-A/148455: Polycomb-Associated Non-Coding RNAs.
MA576530 - JP 2018138019-A/148456: Polycomb-Associated Non-Coding RNAs.
MA576534 - JP 2018138019-A/148460: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000229812.1, ENST00000229812.2, ENST00000229812.3, ENST00000229812.4, ENST00000229812.5, ENST00000229812.6, ENST00000229812.7, NDR1 , NM_007271, Q15208, Q503A1, STK38 , STK38_HUMAN, uc317drn.1, uc317drn.2
UCSC ID: ENST00000229812.8_7
RefSeq Accession: NM_007271.4
Protein: Q15208 (aka STK38_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.