Human Gene STRBP (ENST00000348403.10_7) from GENCODE V47lift37
  Description: spermatid perinuclear RNA binding protein, transcript variant 1 (from RefSeq NM_018387.5)
Gencode Transcript: ENST00000348403.10_7
Gencode Gene: ENSG00000165209.19_14
Transcript (Including UTRs)
   Position: hg19 chr9:125,883,896-126,030,865 Size: 146,970 Total Exon Count: 19 Strand: -
Coding Region
   Position: hg19 chr9:125,887,876-125,946,413 Size: 58,538 Coding Exon Count: 17 

Page IndexSequence and LinksPrimersMalaCardsCTDGene Alleles
RNA-Seq ExpressionRNA StructureOther SpeciesmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:125,883,896-126,030,865)mRNA (may differ from genome)Protein (672 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedUniProtKB
WikipediaBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: STRBP
Diseases sorted by gene-association score: cryptorchidism (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 16.32 RPKM in Testis
Total median expression: 158.41 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -171.50452-0.379 Picture PostScript Text
3' UTR -1050.903980-0.264 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Descriptions from all associated GenBank mRNAs
  KJ899131 - Synthetic construct Homo sapiens clone ccsbBroadEn_08525 STRBP gene, encodes complete protein.
GQ891469 - Homo sapiens clone HEL-S-190 epididymis secretory sperm binding protein mRNA, complete cds.
BC017732 - Homo sapiens spermatid perinuclear RNA binding protein, mRNA (cDNA clone MGC:21529 IMAGE:3914088), complete cds.
EU794683 - Homo sapiens epididymis luminal protein 162 (HEL162) mRNA, complete cds.
AL136866 - Homo sapiens mRNA; cDNA DKFZp434N214 (from clone DKFZp434N214).
AL833947 - Homo sapiens mRNA; cDNA DKFZp434G151 (from clone DKFZp434G151).
AL834150 - Homo sapiens mRNA; cDNA DKFZp434P151 (from clone DKFZp434P151).
AK027890 - Homo sapiens cDNA FLJ14984 fis, clone Y79AA1000349, highly similar to M.musculus Spnr mRNA for RNA binding protein.
BC108731 - Homo sapiens spermatid perinuclear RNA binding protein, mRNA (cDNA clone IMAGE:6172859), partial cds.
AK025613 - Homo sapiens cDNA: FLJ21960 fis, clone HEP05517.
AK024285 - Homo sapiens cDNA FLJ14223 fis, clone NT2RP3004013, highly similar to M.musculus Spnr mRNA for RNA binding protein.
AK002169 - Homo sapiens cDNA FLJ11307 fis, clone PLACE1010053, spermatid perinuclear RNA-binding protein.
AF333337 - Homo sapiens spermatid perinuclear RNA-binding protein mRNA, complete cds.
JD225984 - Sequence 207008 from Patent EP1572962.
AK024960 - Homo sapiens cDNA: FLJ21307 fis, clone COL02129.
BC002693 - Homo sapiens spermatid perinuclear RNA binding protein, mRNA (cDNA clone IMAGE:3606572), partial cds.
JD360331 - Sequence 341355 from Patent EP1572962.
JD400318 - Sequence 381342 from Patent EP1572962.
JD038588 - Sequence 19612 from Patent EP1572962.
AB385122 - Synthetic construct DNA, clone: pF1KB5567, Homo sapiens STRBP gene for spermatid perinuclear RNA-binding protein, complete cds, without stop codon, in Flexi system.
AM393028 - Synthetic construct Homo sapiens clone IMAGE:100002440 for hypothetical protein (STRBP gene).
KU178696 - Homo sapiens spermatid perinuclear RNA binding protein isoform 1 (STRBP) mRNA, partial cds.
KU178697 - Homo sapiens spermatid perinuclear RNA binding protein isoform 2 (STRBP) mRNA, partial cds, alternatively spliced.
CU676038 - Synthetic construct Homo sapiens gateway clone IMAGE:100017446 5' read STRBP mRNA.
JD492710 - Sequence 473734 from Patent EP1572962.
JD303895 - Sequence 284919 from Patent EP1572962.
JD189905 - Sequence 170929 from Patent EP1572962.
JD373695 - Sequence 354719 from Patent EP1572962.
JD091479 - Sequence 72503 from Patent EP1572962.
JD318061 - Sequence 299085 from Patent EP1572962.
JD222399 - Sequence 203423 from Patent EP1572962.
JD079140 - Sequence 60164 from Patent EP1572962.
JD415160 - Sequence 396184 from Patent EP1572962.
JD397195 - Sequence 378219 from Patent EP1572962.
JD069838 - Sequence 50862 from Patent EP1572962.
JD514013 - Sequence 495037 from Patent EP1572962.
JD514014 - Sequence 495038 from Patent EP1572962.
JD415159 - Sequence 396183 from Patent EP1572962.
JD514015 - Sequence 495039 from Patent EP1572962.
JD415158 - Sequence 396182 from Patent EP1572962.
JD308100 - Sequence 289124 from Patent EP1572962.
JD435396 - Sequence 416420 from Patent EP1572962.
JD522085 - Sequence 503109 from Patent EP1572962.
JD543862 - Sequence 524886 from Patent EP1572962.
JD558014 - Sequence 539038 from Patent EP1572962.
JD408521 - Sequence 389545 from Patent EP1572962.
JD219244 - Sequence 200268 from Patent EP1572962.
JD406146 - Sequence 387170 from Patent EP1572962.
JD458418 - Sequence 439442 from Patent EP1572962.
JD128921 - Sequence 109945 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000348403.1, ENST00000348403.2, ENST00000348403.3, ENST00000348403.4, ENST00000348403.5, ENST00000348403.6, ENST00000348403.7, ENST00000348403.8, ENST00000348403.9, hCG_31045 , HEL162 , NM_018387, STRBP , uc317xrb.1, uc317xrb.2, V9HWK4, V9HWK4_HUMAN
UCSC ID: ENST00000348403.10_7
RefSeq Accession: NM_018387.5

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.