Human Gene STT3B (ENST00000295770.4_4) from GENCODE V47lift37
  Description: STT3 oligosaccharyltransferase complex catalytic subunit B (from RefSeq NM_178862.3)
Gencode Transcript: ENST00000295770.4_4
Gencode Gene: ENSG00000163527.11_8
Transcript (Including UTRs)
   Position: hg19 chr3:31,574,417-31,679,108 Size: 104,692 Total Exon Count: 16 Strand: +
Coding Region
   Position: hg19 chr3:31,574,491-31,677,556 Size: 103,066 Coding Exon Count: 16 

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Gene AllelesRNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesGeneReviewsModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:31,574,417-31,679,108)mRNA (may differ from genome)Protein (826 aa)
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-  Comments and Description Text from UniProtKB
  ID: STT3B_HUMAN
DESCRIPTION: RecName: Full=Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B; Short=Oligosaccharyl transferase subunit STT3B; Short=STT3-B; EC=2.4.1.119; AltName: Full=Source of immunodominant MHC-associated peptides homolog;
FUNCTION: Catalytic component of oligosaccharyltransferase (OST) oligosaccharyltransferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X- Ser/Thr consensus motif in nascent polypeptide chains. N- glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the endoplasmic reticulum (ER). STT3B is present in a small subset of OST complexes and mediates both cotranslational and post-translational N-glycosylation of target proteins: STT3B-containing complexes are required for efficient cotranslational glycosylation and while they are less competent than STT3A-containing complexes for cotranslational glycosylation, they have the ability to mediate glycosylation of some nascent sites that are not accessible for STT3A. STT3B-containing complexes also act post-translationally and mediate modification of skipped glycosylation sites in unfolded proteins. Plays a role in ER-associated degradation (ERAD) pathway that mediates ubiquitin-dependent degradation of misfolded endoplasmic reticulum proteins by mediating N- glycosylation of unfolded proteins, which are then recognized by the ERAD pathway and targeted for degradation. Mediates glycosylation of the disease variant AMYL-TTR 'Asp-38' of TTR at 'Asn-118', leading to its degradation.
CATALYTIC ACTIVITY: Dolichyl diphosphooligosaccharide + protein L- asparagine = dolichyl diphosphate + a glycoprotein with the oligosaccharide chain attached by N-glycosyl linkage to protein L- asparagine.
SUBUNIT: Component of the oligosaccharyltransferase (OST) complex (By similarity). OST seems to exist in different forms which contain at least RPN1, RPN2, OST48, DAD1, OSTC, KRTCAP2 and either STT3A or STT3B. OST can form stable complexes with the Sec61 complex or with both the Sec61 and TRAP complexes.
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane; Multi-pass membrane protein.
TISSUE SPECIFICITY: Expressed in heart, brain, placenta, lung, liver, muscle, kidney and pancreas. Expressed in skin fibroblasts (at protein level).
SIMILARITY: Belongs to the STT3 family.
SEQUENCE CAUTION: Sequence=AAH15880.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=BAB55370.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=BAC11581.1; Type=Erroneous initiation; Note=Translation N-terminally extended;

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: STT3B
Diseases sorted by gene-association score: congenital disorder of glycosylation, type ix* (1300), stt3b-cdg* (100)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 66.89 RPKM in Ovary
Total median expression: 1219.99 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -33.5074-0.453 Picture PostScript Text
3' UTR -350.301552-0.226 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003674 - Oligo_trans_STT3

Pfam Domains:
PF02516 - Oligosaccharyl transferase STT3 subunit

ModBase Predicted Comparative 3D Structure on Q8TCJ2
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologGenome Browser
Gene DetailsGene Details Gene Details Gene Details
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 RGDEnsembl  SGD
     Protein Sequence
     Alignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004576 oligosaccharyl transferase activity
GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity
GO:0016740 transferase activity
GO:0016757 transferase activity, transferring glycosyl groups
GO:0046872 metal ion binding

Biological Process:
GO:0006486 protein glycosylation
GO:0006516 glycoprotein catabolic process
GO:0006986 response to unfolded protein
GO:0018279 protein N-linked glycosylation via asparagine
GO:0030433 ER-associated ubiquitin-dependent protein catabolic process
GO:0043686 co-translational protein modification
GO:0043687 post-translational protein modification

Cellular Component:
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0008250 oligosaccharyltransferase complex
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  LF208656 - JP 2014500723-A/16159: Polycomb-Associated Non-Coding RNAs.
AK311488 - Homo sapiens cDNA, FLJ18530.
AK074587 - Homo sapiens cDNA FLJ90106 fis, clone HEMBA1006430.
BC172202 - Synthetic construct Homo sapiens clone IMAGE:9094359 source of immunodominant MHC-associated peptides (STT3B) gene, partial cds.
AX799082 - Sequence 1 from Patent WO03054008.
AY074880 - Homo sapiens source of immunodominant MHC-associated peptides (SIMP) mRNA, complete cds.
MA444233 - JP 2018138019-A/16159: Polycomb-Associated Non-Coding RNAs.
LF378807 - JP 2014500723-A/186310: Polycomb-Associated Non-Coding RNAs.
LF378800 - JP 2014500723-A/186303: Polycomb-Associated Non-Coding RNAs.
LF378796 - JP 2014500723-A/186299: Polycomb-Associated Non-Coding RNAs.
AK075380 - Homo sapiens cDNA PSEC0070 fis, clone NT2RP2001508, highly similar to Source of immunodominant MHC-associated peptides.
AK027789 - Homo sapiens cDNA FLJ14883 fis, clone PLACE1003596, moderately similar to OLIGOSACCHARYL TRANSFERASE STT3 SUBUNIT.
LF378795 - JP 2014500723-A/186298: Polycomb-Associated Non-Coding RNAs.
BC015880 - Homo sapiens STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae), mRNA (cDNA clone IMAGE:4722264), complete cds.
BC172203 - Synthetic construct Homo sapiens clone IMAGE:9094361 source of immunodominant MHC-associated peptides (STT3B) gene, partial cds.
KJ903997 - Synthetic construct Homo sapiens clone ccsbBroadEn_13391 STT3B gene, encodes complete protein.
LF378794 - JP 2014500723-A/186297: Polycomb-Associated Non-Coding RNAs.
LF378793 - JP 2014500723-A/186296: Polycomb-Associated Non-Coding RNAs.
LF378792 - JP 2014500723-A/186295: Polycomb-Associated Non-Coding RNAs.
LF378790 - JP 2014500723-A/186293: Polycomb-Associated Non-Coding RNAs.
LF378789 - JP 2014500723-A/186292: Polycomb-Associated Non-Coding RNAs.
LF378788 - JP 2014500723-A/186291: Polycomb-Associated Non-Coding RNAs.
JD233752 - Sequence 214776 from Patent EP1572962.
LF378787 - JP 2014500723-A/186290: Polycomb-Associated Non-Coding RNAs.
JD084083 - Sequence 65107 from Patent EP1572962.
JD327345 - Sequence 308369 from Patent EP1572962.
JD322562 - Sequence 303586 from Patent EP1572962.
JD296646 - Sequence 277670 from Patent EP1572962.
LF378786 - JP 2014500723-A/186289: Polycomb-Associated Non-Coding RNAs.
LF378785 - JP 2014500723-A/186288: Polycomb-Associated Non-Coding RNAs.
LF378784 - JP 2014500723-A/186287: Polycomb-Associated Non-Coding RNAs.
JD052318 - Sequence 33342 from Patent EP1572962.
LF378783 - JP 2014500723-A/186286: Polycomb-Associated Non-Coding RNAs.
JD357506 - Sequence 338530 from Patent EP1572962.
JD287137 - Sequence 268161 from Patent EP1572962.
LF378782 - JP 2014500723-A/186285: Polycomb-Associated Non-Coding RNAs.
LF378781 - JP 2014500723-A/186284: Polycomb-Associated Non-Coding RNAs.
JD090771 - Sequence 71795 from Patent EP1572962.
LF378780 - JP 2014500723-A/186283: Polycomb-Associated Non-Coding RNAs.
JD184402 - Sequence 165426 from Patent EP1572962.
LF378779 - JP 2014500723-A/186282: Polycomb-Associated Non-Coding RNAs.
JD171160 - Sequence 152184 from Patent EP1572962.
MA614384 - JP 2018138019-A/186310: Polycomb-Associated Non-Coding RNAs.
MA614377 - JP 2018138019-A/186303: Polycomb-Associated Non-Coding RNAs.
MA614373 - JP 2018138019-A/186299: Polycomb-Associated Non-Coding RNAs.
MA614372 - JP 2018138019-A/186298: Polycomb-Associated Non-Coding RNAs.
MA614371 - JP 2018138019-A/186297: Polycomb-Associated Non-Coding RNAs.
MA614370 - JP 2018138019-A/186296: Polycomb-Associated Non-Coding RNAs.
MA614369 - JP 2018138019-A/186295: Polycomb-Associated Non-Coding RNAs.
MA614367 - JP 2018138019-A/186293: Polycomb-Associated Non-Coding RNAs.
MA614366 - JP 2018138019-A/186292: Polycomb-Associated Non-Coding RNAs.
MA614365 - JP 2018138019-A/186291: Polycomb-Associated Non-Coding RNAs.
MA614364 - JP 2018138019-A/186290: Polycomb-Associated Non-Coding RNAs.
MA614363 - JP 2018138019-A/186289: Polycomb-Associated Non-Coding RNAs.
MA614362 - JP 2018138019-A/186288: Polycomb-Associated Non-Coding RNAs.
MA614361 - JP 2018138019-A/186287: Polycomb-Associated Non-Coding RNAs.
MA614360 - JP 2018138019-A/186286: Polycomb-Associated Non-Coding RNAs.
MA614359 - JP 2018138019-A/186285: Polycomb-Associated Non-Coding RNAs.
MA614358 - JP 2018138019-A/186284: Polycomb-Associated Non-Coding RNAs.
MA614357 - JP 2018138019-A/186283: Polycomb-Associated Non-Coding RNAs.
MA614356 - JP 2018138019-A/186282: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS - protein N-glycosylation initial phase (eukaryotic)

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000295770.1, ENST00000295770.2, ENST00000295770.3, NM_178862, Q8TCJ2, Q96JZ4, Q96KY7, SIMP, STT3B , STT3B_HUMAN, uc317lof.1, uc317lof.2
UCSC ID: ENST00000295770.4_4
RefSeq Accession: NM_178862.3
Protein: Q8TCJ2 (aka STT3B_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene STT3B:
cdg (Congenital Disorders of N-Linked Glycosylation and Multiple Pathway Overview)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.