Human Gene STXBP4 (ENST00000376352.6_9) from GENCODE V47lift37
  Description: syntaxin binding protein 4, transcript variant 1 (from RefSeq NM_178509.6)
Gencode Transcript: ENST00000376352.6_9
Gencode Gene: ENSG00000166263.13_13
Transcript (Including UTRs)
   Position: hg19 chr17:53,046,126-53,250,993 Size: 204,868 Total Exon Count: 18 Strand: +
Coding Region
   Position: hg19 chr17:53,063,581-53,237,272 Size: 173,692 Coding Exon Count: 16 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:53,046,126-53,250,993)mRNA (may differ from genome)Protein (553 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: STXB4_HUMAN
DESCRIPTION: RecName: Full=Syntaxin-binding protein 4; AltName: Full=Syntaxin 4-interacting protein; Short=STX4-interacting protein; Short=Synip;
FUNCTION: Plays a role in the translocation of transport vesicles from the cytoplasm to the plasma membrane. Inhibits the translocation of SLC2A4 from intracellular vesicles to the plasma membrane by STX4A binding and preventing the interaction between STX4A and VAMP2. Stimulation with insulin disrupts the interaction with STX4A, leading to increased levels of SLC2A4 at the plasma membrane. May also play a role in the regulation of insulin release by pancreatic beta cells after stimulation by glucose (By similarity).
SUBUNIT: Interacts with STX4A (By similarity).
SUBCELLULAR LOCATION: Cytoplasm (By similarity).
PTM: Phosphorylated on Ser-99 by PKB/AKT2 after insulin treatment. Phosphorylation on Ser-99 abolishes the interaction with STX4A (By similarity). Phosphorylated upon DNA damage, probably by ATM or ATR.
SIMILARITY: Contains 1 PDZ (DHR) domain.
SIMILARITY: Contains 1 WW domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.65 RPKM in Pituitary
Total median expression: 42.81 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -52.00207-0.251 Picture PostScript Text
3' UTR -3631.9013721-0.265 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011992 - EF-hand-like_dom
IPR001478 - PDZ
IPR001202 - WW_Rsp5_WWP

Pfam Domains:
PF00397 - WW domain
PF00595 - PDZ domain

SCOP Domains:
47473 - EF-hand
50156 - PDZ domain-like
51045 - WW domain
52540 - P-loop containing nucleoside triphosphate hydrolases

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2YSG - NMR MuPIT


ModBase Predicted Comparative 3D Structure on Q6ZWJ1
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0019905 syntaxin binding

Biological Process:
GO:0006605 protein targeting
GO:0006974 cellular response to DNA damage stimulus
GO:0008286 insulin receptor signaling pathway
GO:0010827 regulation of glucose transport
GO:0010838 positive regulation of keratinocyte proliferation
GO:0050821 protein stabilization
GO:0061178 regulation of insulin secretion involved in cellular response to glucose stimulus
GO:0071346 cellular response to interferon-gamma
GO:1902808 positive regulation of cell cycle G1/S phase transition

Cellular Component:
GO:0005737 cytoplasm
GO:0045335 phagocytic vesicle
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  AK122865 - Homo sapiens cDNA FLJ16496 fis, clone CTONG3006186, moderately similar to Mus musculus syntaxin binding protein 4 (Stxbp4).
BC125116 - Homo sapiens syntaxin binding protein 4, mRNA (cDNA clone MGC:149829 IMAGE:40118892), complete cds.
BC041485 - Homo sapiens syntaxin binding protein 4, mRNA (cDNA clone IMAGE:5491176), complete cds.
KJ904053 - Synthetic construct Homo sapiens clone ccsbBroadEn_13447 STXBP4 gene, encodes complete protein.
JD469360 - Sequence 450384 from Patent EP1572962.
JD511725 - Sequence 492749 from Patent EP1572962.
JD333376 - Sequence 314400 from Patent EP1572962.
JD310032 - Sequence 291056 from Patent EP1572962.
AK123793 - Homo sapiens cDNA FLJ41799 fis, clone NHNPC2001312.
AK025673 - Homo sapiens cDNA: FLJ22020 fis, clone HEP08123.
AK090797 - Homo sapiens cDNA FLJ33478 fis, clone BRAMY2002621.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000376352.1, ENST00000376352.2, ENST00000376352.3, ENST00000376352.4, ENST00000376352.5, NM_178509, Q6ZWJ1, Q8IVZ5, STXB4_HUMAN, uc318mwq.1, uc318mwq.2
UCSC ID: ENST00000376352.6_9
RefSeq Accession: NM_178509.6
Protein: Q6ZWJ1 (aka STXB4_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.