Human Gene TADA2A (ENST00000615182.5_4) from GENCODE V47lift37
  Description: transcriptional adaptor 2A, transcript variant 3 (from RefSeq NM_001166105.3)
Gencode Transcript: ENST00000615182.5_4
Gencode Gene: ENSG00000276234.5_10
Transcript (Including UTRs)
   Position: hg19 chr17:35,766,977-35,839,830 Size: 72,854 Total Exon Count: 16 Strand: +
Coding Region
   Position: hg19 chr17:35,771,453-35,837,087 Size: 65,635 Coding Exon Count: 15 

Page IndexSequence and LinksPrimersMalaCardsCTDGene Alleles
Microarray ExpressionRNA StructureOther SpeciesmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:35,766,977-35,839,830)mRNA (may differ from genome)Protein (443 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedUniProtKB
WikipediaBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: TADA2A
Diseases sorted by gene-association score: chromosome 17q12 deletion syndrome (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -55.50161-0.345 Picture PostScript Text
3' UTR -1011.702743-0.369 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Descriptions from all associated GenBank mRNAs
  CU674594 - Synthetic construct Homo sapiens gateway clone IMAGE:100018800 5' read TADA2L mRNA.
KJ897636 - Synthetic construct Homo sapiens clone ccsbBroadEn_07030 TADA2A gene, encodes complete protein.
CU680044 - Synthetic construct Homo sapiens gateway clone IMAGE:100017277 5' read TADA2L mRNA.
AB385185 - Synthetic construct DNA, clone: pF1KB9017, Homo sapiens TADA2L gene for transcriptional adapter 2-like, complete cds, without stop codon, in Flexi system.
HQ447689 - Synthetic construct Homo sapiens clone IMAGE:100071708; CCSB006855_02 transcriptional adaptor 2 (ADA2 homolog, yeast)-like (TADA2L) gene, encodes complete protein.
KJ897635 - Synthetic construct Homo sapiens clone ccsbBroadEn_07029 TADA2A gene, encodes complete protein.
AK096371 - Homo sapiens cDNA FLJ39052 fis, clone NT2RP7011721, highly similar to Transcriptional adapter 2.
AK225918 - Homo sapiens mRNA for Transcriptional adapter 2-like, clone: FCC118D01.
AK022767 - Homo sapiens cDNA FLJ12705 fis, clone NT2RP1000860, highly similar to Transcriptional adapter 2.
BC001172 - Homo sapiens transcriptional adaptor 2 (ADA2 homolog, yeast)-like, mRNA (cDNA clone MGC:1984 IMAGE:3355742), complete cds.
BC011753 - Homo sapiens transcriptional adaptor 2 (ADA2 homolog, yeast)-like, mRNA (cDNA clone MGC:19708 IMAGE:3533186), complete cds.
AF064094 - Homo sapiens KL04P mRNA, complete cds.
KU178344 - Homo sapiens transcriptional adaptor 2A isoform 1 (TADA2A) mRNA, partial cds.
KU178345 - Homo sapiens transcriptional adaptor 2A isoform 2 (TADA2A) mRNA, complete cds, alternatively spliced.
JD423873 - Sequence 404897 from Patent EP1572962.
AF069732 - Homo sapiens ADA2-like protein mRNA, complete cds.
JD073134 - Sequence 54158 from Patent EP1572962.
JD231436 - Sequence 212460 from Patent EP1572962.
JD303571 - Sequence 284595 from Patent EP1572962.
JD092976 - Sequence 74000 from Patent EP1572962.
JD547836 - Sequence 528860 from Patent EP1572962.
JD110509 - Sequence 91533 from Patent EP1572962.
JD307677 - Sequence 288701 from Patent EP1572962.
JD139546 - Sequence 120570 from Patent EP1572962.
JD151010 - Sequence 132034 from Patent EP1572962.
JD070100 - Sequence 51124 from Patent EP1572962.
JD239650 - Sequence 220674 from Patent EP1572962.
JD365164 - Sequence 346188 from Patent EP1572962.
JD342073 - Sequence 323097 from Patent EP1572962.
JD480371 - Sequence 461395 from Patent EP1572962.
AK123123 - Homo sapiens cDNA FLJ41128 fis, clone BRACE2018448.
JD222881 - Sequence 203905 from Patent EP1572962.
JD344186 - Sequence 325210 from Patent EP1572962.
JD430072 - Sequence 411096 from Patent EP1572962.
JD528943 - Sequence 509967 from Patent EP1572962.
JD168649 - Sequence 149673 from Patent EP1572962.
JD039576 - Sequence 20600 from Patent EP1572962.
JD050556 - Sequence 31580 from Patent EP1572962.
JD321035 - Sequence 302059 from Patent EP1572962.
JD446945 - Sequence 427969 from Patent EP1572962.
JD175650 - Sequence 156674 from Patent EP1572962.
JD331871 - Sequence 312895 from Patent EP1572962.
JD182661 - Sequence 163685 from Patent EP1572962.
JD084199 - Sequence 65223 from Patent EP1572962.
JD084200 - Sequence 65224 from Patent EP1572962.
JD246709 - Sequence 227733 from Patent EP1572962.
JD100439 - Sequence 81463 from Patent EP1572962.
JD057178 - Sequence 38202 from Patent EP1572962.
JD405316 - Sequence 386340 from Patent EP1572962.
JD162511 - Sequence 143535 from Patent EP1572962.
JD282329 - Sequence 263353 from Patent EP1572962.
JD271570 - Sequence 252594 from Patent EP1572962.
JD340471 - Sequence 321495 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A024R0U3, A0A024R0Y4, A0A024R0Y4_HUMAN, ENST00000615182.1, ENST00000615182.2, ENST00000615182.3, ENST00000615182.4, hCG_28187 , NM_001166105, TADA2A , TADA2L , uc327psn.1, uc327psn.2
UCSC ID: ENST00000615182.5_4
RefSeq Accession: NM_001166105.3

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.