Human Gene WWTR1 (ENST00000360632.8_6) from GENCODE V47lift37
  Description: WW domain containing transcription regulator 1, transcript variant 1 (from RefSeq NM_015472.6)
Gencode Transcript: ENST00000360632.8_6
Gencode Gene: ENSG00000018408.15_13
Transcript (Including UTRs)
   Position: hg19 chr3:149,235,022-149,375,812 Size: 140,791 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr3:149,238,592-149,375,093 Size: 136,502 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:149,235,022-149,375,812)mRNA (may differ from genome)Protein (400 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: WWTR1_HUMAN
DESCRIPTION: RecName: Full=WW domain-containing transcription regulator protein 1; AltName: Full=Transcriptional coactivator with PDZ-binding motif;
FUNCTION: Transcriptional coactivator which acts as a downstream regulatory target in the Hippo signaling pathway that plays a pivotal role in organ size control and tumor suppression by restricting proliferation and promoting apoptosis. The core of this pathway is composed of a kinase cascade wherein STK3/MST2 and STK4/MST1, in complex with its regulatory protein SAV1, phosphorylates and activates LATS1/2 in complex with its regulatory protein MOB1, which in turn phosphorylates and inactivates YAP1 oncoprotein and WWTR1/TAZ. WWTR1 enhances PAX8 and NKX2-1/TTF1-dependent gene activation. Regulates the nuclear accumulation of SMADS and has a key role in coupling them to the transcriptional machinery such as the mediator complex. Regulates embryonic stem-cell self-renewal, promotes cell proliferation and epithelial-mesenchymal transition.
SUBUNIT: Binds to SLC9A3R2 via the PDZ motif at the plasma membrane. Binds to YWHAZ in vivo and in vitro through the phosphoserine-binding motif RSHSSP (By similarity). Interacts (via coiled-coil domain) with SMAD2 (via MH1 domain), SMAD3 and SMAD4. Interacts with MED15, PAX8 and NKX2-1. Interacts with TEAD1, TEAD2, TEAD3 and TEAD4.
INTERACTION: Q8IX12:CCAR1; NbExp=2; IntAct=EBI-747743, EBI-356265; O95835:LATS1; NbExp=4; IntAct=EBI-747743, EBI-444209; Q15561:TEAD4; NbExp=2; IntAct=EBI-747743, EBI-747736; Q969T9:WBP2; NbExp=6; IntAct=EBI-747743, EBI-727055;
SUBCELLULAR LOCATION: Nucleus. Cytoplasm. Note=Concentrates along specific portions of the plasma membrane, and accumulates in punctate nuclear bodies. When phosphorylated, is retained in cytoplasm by YWHAZ. Can be retained in the nucleus by MED15.
TISSUE SPECIFICITY: Highly expressed in kidney, heart, placenta and lung. Expressed in the thyroid tissue.
DOMAIN: The PDZ-binding motif is essential for stimulated gene transcription. It localizes the protein into both punctate nuclear foci and plasma membrane-associated complexes (By similarity).
DOMAIN: Binds to transcription factors via its WW domain.
PTM: Phosphorylated by LATS2 and STK3/MST2. Phosphorylation by LATS2 results in creation of 14-3-3 binding sites, retention in the cytoplasm, and functional inactivation. Phosphorylation results in the inhibition of transcriptional coactivation through YWHAZ-mediated nuclear export.
SIMILARITY: Contains 1 WW domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: WWTR1
Diseases sorted by gene-association score: epithelioid hemangioendothelioma* (207), liver angiosarcoma (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 37.98 RPKM in Esophagus - Muscularis
Total median expression: 599.13 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -110.60264-0.419 Picture PostScript Text
3' UTR -870.903570-0.244 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001202 - WW_Rsp5_WWP

Pfam Domains:
PF00397 - WW domain

SCOP Domains:
51045 - WW domain
160582 - MbtH-like

ModBase Predicted Comparative 3D Structure on Q9GZV5
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003713 transcription coactivator activity
GO:0003714 transcription corepressor activity
GO:0005515 protein binding
GO:0042803 protein homodimerization activity

Biological Process:
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0001649 osteoblast differentiation
GO:0001933 negative regulation of protein phosphorylation
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006367 transcription initiation from RNA polymerase II promoter
GO:0006469 negative regulation of protein kinase activity
GO:0008284 positive regulation of cell proliferation
GO:0010718 positive regulation of epithelial to mesenchymal transition
GO:0016567 protein ubiquitination
GO:0017145 stem cell division
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0032835 glomerulus development
GO:0035264 multicellular organism growth
GO:0035329 hippo signaling
GO:0045599 negative regulation of fat cell differentiation
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0048762 mesenchymal cell differentiation
GO:0060271 cilium assembly
GO:0060390 regulation of SMAD protein import into nucleus
GO:0060828 regulation of canonical Wnt signaling pathway
GO:0060993 kidney morphogenesis
GO:0072307 regulation of metanephric nephron tubule epithelial cell differentiation
GO:0090090 negative regulation of canonical Wnt signaling pathway

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005667 transcription factor complex
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0016604 nuclear body


-  Descriptions from all associated GenBank mRNAs
  LF206122 - JP 2014500723-A/13625: Polycomb-Associated Non-Coding RNAs.
AL833852 - Homo sapiens mRNA; cDNA DKFZp761G0111 (from clone DKFZp761G0111).
BC014052 - Homo sapiens WW domain containing transcription regulator 1, mRNA (cDNA clone MGC:19891 IMAGE:3635491), complete cds.
AJ299431 - Homo sapiens mRNA for transcriptional coactivator (TAZ gene).
AK022036 - Homo sapiens cDNA FLJ11974 fis, clone HEMBB1001234, moderately similar to 65 KD YES-ASSOCIATED PROTEIN.
DQ893378 - Synthetic construct clone IMAGE:100006008; FLH199449.01X; RZPDo839A0582D WW domain containing transcription regulator 1 (WWTR1) gene, encodes complete protein.
KJ893495 - Synthetic construct Homo sapiens clone ccsbBroadEn_02889 WWTR1 gene, encodes complete protein.
DQ896699 - Synthetic construct Homo sapiens clone IMAGE:100011159; FLH199355.01L; RZPDo839A0581D WW domain containing transcription regulator 1 (WWTR1) gene, encodes complete protein.
AB385556 - Synthetic construct DNA, clone: pF1KB5651, Homo sapiens WWTR1 gene for WW domain-containing transcription regulator protein 1, complete cds, without stop codon, in Flexi system.
CU680762 - Synthetic construct Homo sapiens gateway clone IMAGE:100019239 5' read WWTR1 mRNA.
AK127620 - Homo sapiens cDNA FLJ45718 fis, clone FELNG2001706.
MA441699 - JP 2018138019-A/13625: Polycomb-Associated Non-Coding RNAs.
AK025216 - Homo sapiens cDNA: FLJ21563 fis, clone COL06445.
LF351603 - JP 2014500723-A/159106: Polycomb-Associated Non-Coding RNAs.
LF351604 - JP 2014500723-A/159107: Polycomb-Associated Non-Coding RNAs.
LF351605 - JP 2014500723-A/159108: Polycomb-Associated Non-Coding RNAs.
AL050107 - Homo sapiens mRNA; cDNA DKFZp586I1419 (from clone DKFZp586I1419); partial cds.
AK130514 - Homo sapiens cDNA FLJ27004 fis, clone SLV04966.
LF351606 - JP 2014500723-A/159109: Polycomb-Associated Non-Coding RNAs.
LF351607 - JP 2014500723-A/159110: Polycomb-Associated Non-Coding RNAs.
LF351608 - JP 2014500723-A/159111: Polycomb-Associated Non-Coding RNAs.
LF351609 - JP 2014500723-A/159112: Polycomb-Associated Non-Coding RNAs.
LF351610 - JP 2014500723-A/159113: Polycomb-Associated Non-Coding RNAs.
JD346682 - Sequence 327706 from Patent EP1572962.
JD466379 - Sequence 447403 from Patent EP1572962.
JD156714 - Sequence 137738 from Patent EP1572962.
JD312194 - Sequence 293218 from Patent EP1572962.
JD379740 - Sequence 360764 from Patent EP1572962.
LF351611 - JP 2014500723-A/159114: Polycomb-Associated Non-Coding RNAs.
LF351612 - JP 2014500723-A/159115: Polycomb-Associated Non-Coding RNAs.
JD259963 - Sequence 240987 from Patent EP1572962.
JD289814 - Sequence 270838 from Patent EP1572962.
JD068090 - Sequence 49114 from Patent EP1572962.
JD280052 - Sequence 261076 from Patent EP1572962.
MA587180 - JP 2018138019-A/159106: Polycomb-Associated Non-Coding RNAs.
MA587181 - JP 2018138019-A/159107: Polycomb-Associated Non-Coding RNAs.
MA587182 - JP 2018138019-A/159108: Polycomb-Associated Non-Coding RNAs.
MA587183 - JP 2018138019-A/159109: Polycomb-Associated Non-Coding RNAs.
MA587184 - JP 2018138019-A/159110: Polycomb-Associated Non-Coding RNAs.
MA587185 - JP 2018138019-A/159111: Polycomb-Associated Non-Coding RNAs.
MA587186 - JP 2018138019-A/159112: Polycomb-Associated Non-Coding RNAs.
MA587187 - JP 2018138019-A/159113: Polycomb-Associated Non-Coding RNAs.
MA587188 - JP 2018138019-A/159114: Polycomb-Associated Non-Coding RNAs.
MA587189 - JP 2018138019-A/159115: Polycomb-Associated Non-Coding RNAs.
LF351648 - JP 2014500723-A/159151: Polycomb-Associated Non-Coding RNAs.
JD370992 - Sequence 352016 from Patent EP1572962.
JD359099 - Sequence 340123 from Patent EP1572962.
JD436915 - Sequence 417939 from Patent EP1572962.
MA587225 - JP 2018138019-A/159151: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9GZV5 (Reactome details) participates in the following event(s):

R-HSA-2028661 Phosphorylation of WWTR1 (TAZ) by LATS2
R-HSA-2028735 AMOT proteins bind WWTR1 (TAZ)
R-HSA-2031355 WWTR1 binds SMAD2/3:SMAD4 heterotrimer
R-HSA-2032768 Translocation of WWTR1 (TAZ) to the nucleus
R-HSA-2060328 Phosphorylation of WWTR1 (TAZ) by LATS1
R-HSA-2064417 WWTR1 (TAZ) binds ZO-1 (TJP1)
R-HSA-2064418 WWTR1 (TAZ) binds ZO-2 (TJP2)
R-HSA-2032781 WWTR1 (TAZ) binds TEAD
R-HSA-2032794 WWTR1 (TAZ), TBX5, and PCAF form a complex
R-HSA-2064932 WWTR1 (TAZ) binds RUNX2
R-HSA-2028651 YWHAE (14-3-3 epsilon) dimer binds phosphorylated WWTR1 (TAZ)
R-HSA-2066299 DVL2 binds phosphorylated WWTR1 (TAZ)
R-HSA-2106579 WWTR1:SMAD translocates to the nucleus
R-HSA-8985227 The complex of RUNX2 and WWTR1 (TAZ) binds the BGLAP gene promoter
R-HSA-2028269 Signaling by Hippo
R-HSA-2173796 SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription
R-HSA-2032785 YAP1- and WWTR1 (TAZ)-stimulated gene expression
R-HSA-8940973 RUNX2 regulates osteoblast differentiation
R-HSA-162582 Signal Transduction
R-HSA-2173793 Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer
R-HSA-212436 Generic Transcription Pathway
R-HSA-8941326 RUNX2 regulates bone development
R-HSA-170834 Signaling by TGF-beta Receptor Complex
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-8878166 Transcriptional regulation by RUNX2
R-HSA-9006936 Signaling by TGF-beta family members
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: D3DNH7, ENST00000360632.1, ENST00000360632.2, ENST00000360632.3, ENST00000360632.4, ENST00000360632.5, ENST00000360632.6, ENST00000360632.7, NM_015472, Q8N3P2, Q9GZV5, Q9Y3W6, TAZ, uc318bqt.1, uc318bqt.2, WWTR1_HUMAN
UCSC ID: ENST00000360632.8_6
RefSeq Accession: NM_015472.6
Protein: Q9GZV5 (aka WWTR1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.