Human Gene TCEAL5 (ENST00000372680.2_7) from GENCODE V47lift37
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Sequence and Links to Tools and Databases
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Comments and Description Text from UniProtKB
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ID: TCAL5_HUMAN
DESCRIPTION: RecName: Full=Transcription elongation factor A protein-like 5; Short=TCEA-like protein 5; AltName: Full=Transcription elongation factor S-II protein-like 5;
FUNCTION: May be involved in transcriptional regulation. INTERACTION: P43354:NR4A2; NbExp=2; IntAct=EBI-2681773, EBI-2681738; SUBCELLULAR LOCATION: Nucleus (Probable). SIMILARITY: Belongs to the TFS-II family. TFA subfamily.
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Primer design for this transcript
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Comparative Toxicogenomics Database (CTD)
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The following chemicals interact with this gene
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Common Gene Haplotype Alleles
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RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
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Microarray Expression Data
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mRNA Secondary Structure of 3' and 5' UTRs
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The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
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Protein Domain and Structure Information
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InterPro Domains: Graphical view of domain structure IPR021156 - TF_A-like/BEX-like
IPR010370 - TFA
Pfam Domains: PF04538 - Brain expressed X-linked like family
ModBase Predicted Comparative 3D Structure on Q5H9L2
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
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Orthologous Genes in Other Species
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Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
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Gene Ontology (GO) Annotations with Structured Vocabulary
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Descriptions from all associated GenBank mRNAs
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AF086094 - Homo sapiens full length insert cDNA clone YZ87H06. JD178844 - Sequence 159868 from Patent EP1572962. BC132922 - Homo sapiens transcription elongation factor A (SII)-like 5, mRNA (cDNA clone MGC:164553 IMAGE:40146944), complete cds. BC132924 - Homo sapiens transcription elongation factor A (SII)-like 5, mRNA (cDNA clone MGC:164555 IMAGE:40146946), complete cds. JD259487 - Sequence 240511 from Patent EP1572962. KJ896080 - Synthetic construct Homo sapiens clone ccsbBroadEn_05474 TCEAL5 gene, encodes complete protein. AB464731 - Synthetic construct DNA, clone: pF1KB8761, Homo sapiens TCEAL5 gene for transcription elongation factor A (SII)-like 5, without stop codon, in Flexi system. JD510452 - Sequence 491476 from Patent EP1572962. JD173031 - Sequence 154055 from Patent EP1572962. JD504994 - Sequence 486018 from Patent EP1572962. JD157431 - Sequence 138455 from Patent EP1572962.
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Other Names for This Gene
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Alternate Gene Symbols: A2RUJ4, ENST00000372680.1, NM_001012979, Q5H9L2, TCAL5_HUMAN, uc318kcu.1, uc318kcu.2 UCSC ID: ENST00000372680.2_7 RefSeq Accession: NM_001012979.3
Protein: Q5H9L2
(aka TCAL5_HUMAN)
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Gene Model Information
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for a detailed description of the fields of the table above.
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Methods, Credits, and Use Restrictions
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Click here
for details on how this gene model was made and data restrictions if any.
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