Human Gene TCERG1 (ENST00000679501.2_4) from GENCODE V47lift37
  Description: transcription elongation regulator 1, transcript variant 64 (from RefSeq NR_174450.1)
Gencode Transcript: ENST00000679501.2_4
Gencode Gene: ENSG00000113649.14_11
Transcript (Including UTRs)
   Position: hg19 chr5:145,826,896-145,891,524 Size: 64,629 Total Exon Count: 23 Strand: +
Coding Region
   Position: hg19 chr5:145,826,913-145,890,205 Size: 63,293 Coding Exon Count: 23 

Page IndexSequence and LinksPrimersMalaCardsCTDGene Alleles
Microarray ExpressionRNA StructureOther SpeciesmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:145,826,896-145,891,524)mRNA (may differ from genome)Protein (1115 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblExonPrimerGeneCardsHGNC
MalacardsMGIPubMedUniProtKBWikipedia

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: TCERG1
Diseases sorted by gene-association score: huntington disease (7)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -1.2017-0.071 Picture PostScript Text
3' UTR -293.271319-0.222 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
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-  Descriptions from all associated GenBank mRNAs
  BC006109 - Homo sapiens transcription elongation regulator 1, mRNA (cDNA clone IMAGE:3050987), containing frame-shift errors.
BC014151 - Homo sapiens transcription elongation regulator 1, mRNA (cDNA clone IMAGE:3636799).
BC062351 - Homo sapiens transcription elongation regulator 1, mRNA (cDNA clone IMAGE:3618446), partial cds.
AK126455 - Homo sapiens cDNA FLJ44491 fis, clone UTERU2035328, moderately similar to Homo sapiens putative transcription factor CA150 mRNA.
BC111727 - Homo sapiens transcription elongation regulator 1, mRNA (cDNA clone MGC:133200 IMAGE:40028766), complete cds.
AB209910 - Homo sapiens mRNA for transcription elongation regulator 1 variant protein.
AB464301 - Synthetic construct DNA, clone: pF1KB5637, Homo sapiens TCERG1 gene for transcription elongation regulator 1, without stop codon, in Flexi system.
AF017789 - Homo sapiens putative transcription factor CA150 mRNA, complete cds.
BC035150 - Homo sapiens cDNA clone IMAGE:5264946, with apparent retained intron.
AK304319 - Homo sapiens cDNA FLJ61669 complete cds, highly similar to Transcription elongation regulator 1.
AK074511 - Homo sapiens cDNA FLJ90030 fis, clone HEMBA1001297, highly similar to Homo sapiens putative transcription factor CA150 mRNA.
BC015864 - Homo sapiens transcription elongation regulator 1, mRNA (cDNA clone IMAGE:4691758), with apparent retained intron.
JD360427 - Sequence 341451 from Patent EP1572962.
JD282752 - Sequence 263776 from Patent EP1572962.
JD475681 - Sequence 456705 from Patent EP1572962.
JD184324 - Sequence 165348 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A7P0T8N8, A0A7P0T8N8_HUMAN, ENST00000679501.1, NR_174450, TCERG1 , uc330fpc.1, uc330fpc.2
UCSC ID: ENST00000679501.2_4
RefSeq Accession: NM_001382548.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.