Human Gene TCF7L2 (ENST00000355995.9_7) from GENCODE V47lift37
  Description: transcription factor 7 like 2, transcript variant 17 (from RefSeq NM_001367943.1)
Gencode Transcript: ENST00000355995.9_7
Gencode Gene: ENSG00000148737.18_21
Transcript (Including UTRs)
   Position: hg19 chr10:114,710,006-114,927,437 Size: 217,432 Total Exon Count: 15 Strand: +
Coding Region
   Position: hg19 chr10:114,710,516-114,925,731 Size: 215,216 Coding Exon Count: 15 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:114,710,006-114,927,437)mRNA (may differ from genome)Protein (619 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: TF7L2_HUMAN
DESCRIPTION: RecName: Full=Transcription factor 7-like 2; AltName: Full=HMG box transcription factor 4; AltName: Full=T-cell-specific transcription factor 4; Short=T-cell factor 4; Short=TCF-4; Short=hTCF-4;
FUNCTION: Participates in the Wnt signaling pathway and modulates MYC expression by binding to its promoter in a sequence-specific manner. Acts as repressor in the absence of CTNNB1, and as activator in its presence. Activates transcription from promoters with several copies of the Tcf motif 5'-CCTTTGATC-3' in the presence of CTNNB1. TLE1, TLE2, TLE3 and TLE4 repress transactivation mediated by TCF7L2/TCF4 and CTNNB1. Expression of dominant-negative mutants results in cell-cycle arrest in G1. Necessary for the maintenance of the epithelial stem-cell compartment of the small intestine.
SUBUNIT: Interacts with TGFB1I1 (By similarity). Interacts with CTNNB1 (via the armadillo repeat); forms stable transcription complex. Interacts with EP300. Interacts with NLK. Interacts with CCDC85B (probably through the HMG box); prevents interaction with CTNNB1. Interacts with TNIK. Interacts with MAD2L2; prevents TCF7L2/TCF4 binding to promZIPK/DAPK3oters, negatively modulating its transcriptional activity. Interacts with ZIPK/DAPK3. Interacts with XIAP/BIRC4 and TLE3. Interacts with DDIT3/CHOP.
INTERACTION: P35222:CTNNB1; NbExp=27; IntAct=EBI-924724, EBI-491549; Q9UER7:DAXX; NbExp=5; IntAct=EBI-924724, EBI-77321; P14923:JUP; NbExp=13; IntAct=EBI-924724, EBI-702484; Q13761:RUNX3; NbExp=14; IntAct=EBI-924724, EBI-925990; P12956:XRCC6; NbExp=9; IntAct=EBI-924724, EBI-353208;
SUBCELLULAR LOCATION: Nucleus, PML body. Note=Diffuse pattern. Colocalizes with SUMO1 and PIAS4 in a subset of PML (promyelocytic leukemia) nuclear bodies.
TISSUE SPECIFICITY: Detected in epithelium from small intestine, with the highest expression at the top of the crypts and a gradient of expression from crypt to villus. Detected in colon epithelium and colon cancer, and in epithelium from mammary gland and carcinomas derived therefrom.
DEVELOPMENTAL STAGE: Highly expressed in crypt regions and barely detectable in villi in epithelium from fetal small intestine at week 16. At week 22 expression in villi had increased strongly.
DOMAIN: The promoter-specific activation domain interacts with the transcriptional coactivator EP300.
PTM: In vitro, phosphorylated by TNIK.
PTM: Phosphorylated at Thr-201 and/or Thr-212 by NLK. Phosphorylation by NLK at these sites inhibits DNA-binding by TCF7L2/TCF4, thereby preventing transcriptional activation of target genes of the canonical Wnt/beta-catenin signaling pathway.
PTM: Polysumoylated. Sumoylation is enhanced by PIAS family members and desumoylation is enhanced by SENP2. Sumoylation/desumoylation regulates TCF7L2/TCF4 transcription activity in the Wnt/beta-catenin signaling pathway without altering interaction with CTNNB1 nor binding to DNA.
DISEASE: Note=Constitutive activation and subsequent transactivation of target genes may lead to the maintenance of stem-cell characteristics (cycling and longevity) in cells that should normally undergo terminal differentiation and constitute the primary transforming event in colorectal cancer (CRC).
DISEASE: Genetic variations in TCF7L2 are associated with susceptibility to non-insulin-dependent diabetes mellitus (NIDDM) [MIM:125853]. NIDDM is characterized by an autosomal dominant mode of inheritance, onset during adulthood and insulin resistance.
SIMILARITY: Belongs to the TCF/LEF family.
SIMILARITY: Contains 1 HMG box DNA-binding domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: TCF7L2
Diseases sorted by gene-association score: diabetes mellitus, noninsulin-dependent* (140), colorectal cancer (15), tropical calcific pancreatitis (7), gestational diabetes (6), acute insulin response (6), prediabetes syndrome (5), breast cancer (3), prostate cancer (2), glucose metabolism disease (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 17.00 RPKM in Breast - Mammary Tissue
Total median expression: 393.87 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -110.70510-0.217 Picture PostScript Text
3' UTR -378.101706-0.222 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR013558 - CTNNB1-bd_N
IPR009071 - HMG_superfamily
IPR024940 - TCF/LEF

Pfam Domains:
PF00505 - HMG (high mobility group) box
PF08347 - N-terminal CTNNB1 binding
PF09011 - HMG-box domain

SCOP Domains:
47095 - HMG-box

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1JDH - X-ray MuPIT 1JPW - X-ray MuPIT 2GL7 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q9NQB0
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001103 RNA polymerase II repressing transcription factor binding
GO:0003677 DNA binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0005515 protein binding
GO:0008013 beta-catenin binding
GO:0008134 transcription factor binding
GO:0019901 protein kinase binding
GO:0035257 nuclear hormone receptor binding
GO:0043565 sequence-specific DNA binding
GO:0044212 transcription regulatory region DNA binding
GO:0045295 gamma-catenin binding
GO:0070016 armadillo repeat domain binding

Biological Process:
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0001568 blood vessel development
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0007050 cell cycle arrest
GO:0007223 Wnt signaling pathway, calcium modulating pathway
GO:0008283 cell proliferation
GO:0009749 response to glucose
GO:0010909 positive regulation of heparan sulfate proteoglycan biosynthetic process
GO:0016055 Wnt signaling pathway
GO:0031016 pancreas development
GO:0032024 positive regulation of insulin secretion
GO:0032092 positive regulation of protein binding
GO:0032350 regulation of hormone metabolic process
GO:0042593 glucose homeostasis
GO:0043433 negative regulation of sequence-specific DNA binding transcription factor activity
GO:0043570 maintenance of DNA repeat elements
GO:0044334 canonical Wnt signaling pathway involved in positive regulation of epithelial to mesenchymal transition
GO:0045444 fat cell differentiation
GO:0045892 negative regulation of transcription, DNA-templated
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0046827 positive regulation of protein export from nucleus
GO:0048625 myoblast fate commitment
GO:0048660 regulation of smooth muscle cell proliferation
GO:0051897 positive regulation of protein kinase B signaling
GO:0060070 canonical Wnt signaling pathway
GO:0090090 negative regulation of canonical Wnt signaling pathway
GO:1904837 beta-catenin-TCF complex assembly
GO:2000675 negative regulation of type B pancreatic cell apoptotic process
GO:2001237 negative regulation of extrinsic apoptotic signaling pathway

Cellular Component:
GO:0000790 nuclear chromatin
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0016605 PML body
GO:0032993 protein-DNA complex
GO:0070369 beta-catenin-TCF7L2 complex


-  Descriptions from all associated GenBank mRNAs
  AK225809 - Homo sapiens mRNA for Splice isoform 8 of Q9NQB0 variant, clone: FCC130A07.
FJ010174 - Homo sapiens TCF7L2 isoform pFC8A_TCF7L2_ex1-11-13-14 mRNA, complete cds, alternatively spliced.
Y11306 - Homo sapiens mRNA for hTCF-4.
AK315243 - Homo sapiens cDNA, FLJ96245.
FJ010168 - Homo sapiens TCF7L2 isoform pFC8A_TCF7L2_H7_ex1-11-13-13b mRNA, complete cds, alternatively spliced.
FJ010169 - Homo sapiens TCF7L2 isoform pFC8A_TCF7L2_B1_ex1-11-12-13-13b mRNA, complete cds, alternatively spliced.
FJ010172 - Homo sapiens TCF7L2 isoform pFC8A_TCF7L2_B8_ex1-11-14 mRNA, complete cds, alternatively spliced.
FJ010170 - Homo sapiens TCF7L2 isoform pFC8A_TCF7L2_ex1-11-12-14 mRNA, complete cds, alternatively spliced.
FJ010166 - Homo sapiens TCF7L2 isoform pFC8A_TCF7L2_A3,ex1-12,13,13a mRNA, complete cds, alternatively spliced.
FJ010167 - Homo sapiens TCF7L2 isoform pFC8A_TCF7L2_D4,ex1-11-13a-14 mRNA, complete cds, alternatively spliced.
BC032656 - Homo sapiens transcription factor 7-like 2 (T-cell specific, HMG-box), mRNA (cDNA clone MGC:44932 IMAGE:5533185), complete cds.
FJ010171 - Homo sapiens TCF7L2 isoform pFC8A_TCF7L2_B4_ex1-no4-11-14 mRNA, complete cds, alternatively spliced.
AK299295 - Homo sapiens cDNA FLJ60833 complete cds, highly similar to Transcription factor 7-like 2.
KJ892257 - Synthetic construct Homo sapiens clone ccsbBroadEn_01651 TCF7L2 gene, encodes complete protein.
AB451266 - Homo sapiens TCF7L2 mRNA for transcription factor 7-like 2, complete cds, clone: FLJ08086AAAN.
AB440195 - Homo sapiens TCF7L2 mRNA for transcription factor 7-like 2 isoform, complete cds.
CR536574 - Homo sapiens full open reading frame cDNA clone RZPDo834H0722D for gene TCF7L2, transcription factor 7-like 2 (T-cell specific, HMG-box); complete cds, incl. stopcodon.
HM352838 - Homo sapiens T-cell factor-4 variant F (TCF7L2) mRNA, complete cds, alternatively spliced.
HM352839 - Homo sapiens T-cell factor-4 variant K (TCF7L2) mRNA, complete cds, alternatively spliced.
HM352840 - Homo sapiens T-cell factor-4 variant D (TCF7L2) mRNA, complete cds, alternatively spliced.
HM352841 - Homo sapiens T-cell factor-4 variant H (TCF7L2) mRNA, complete cds, alternatively spliced.
HM352842 - Homo sapiens T-cell factor-4 variant B (TCF7L2) mRNA, complete cds, alternatively spliced.
HM352843 - Homo sapiens T-cell factor-4 variant C (TCF7L2) mRNA, complete cds, alternatively spliced.
HM352844 - Homo sapiens T-cell factor-4 variant I (TCF7L2) mRNA, complete cds, alternatively spliced.
HM352845 - Homo sapiens T-cell factor-4 variant X2 (TCF7L2) mRNA, complete cds, alternatively spliced.
HM352846 - Homo sapiens T-cell factor-4 variant G (TCF7L2) mRNA, complete cds, alternatively spliced.
HM352847 - Homo sapiens T-cell factor-4 variant J (TCF7L2) mRNA, complete cds, alternatively spliced.
HM352848 - Homo sapiens T-cell factor-4 variant E (TCF7L2) mRNA, complete cds, alternatively spliced.
HM352849 - Homo sapiens T-cell factor-4 variant A (TCF7L2) mRNA, complete cds, alternatively spliced.
HM352850 - Homo sapiens T-cell factor-4 variant M (TCF7L2) mRNA, complete cds, alternatively spliced.
HM352851 - Homo sapiens T-cell factor-4 variant L (TCF7L2) mRNA, complete cds, alternatively spliced.
MF772717 - Homo sapiens transcription factor 7 like 2 isoform E1 (TCF7L2) mRNA, complete cds.
MF772718 - Homo sapiens transcription factor 7 like 2 isoform E4 (TCF7L2) mRNA, complete cds.
BX648364 - Homo sapiens mRNA; cDNA DKFZp686K06191 (from clone DKFZp686K06191).
FJ010164 - Homo sapiens TCF7L2 isoform pFC8A_TCF7L2_D5_ex3-11,12,13a,14 mRNA, complete cds, alternatively spliced.
FJ010165 - Homo sapiens TCF7L2 isoform pFC8A_TCF7L2_D5_ex3,4a-11,12,13a,14 mRNA, complete cds, alternatively spliced.
FJ010173 - Homo sapiens TCF7L2 isoform pFC8A_TCF7L2_H2_ex3-11-12-13-14 mRNA, complete cds, alternatively spliced.
AK301483 - Homo sapiens cDNA FLJ54563 complete cds, highly similar to Transcription factor 7-like 2.
JD391258 - Sequence 372282 from Patent EP1572962.
JD402306 - Sequence 383330 from Patent EP1572962.
JD390508 - Sequence 371532 from Patent EP1572962.
JD415834 - Sequence 396858 from Patent EP1572962.
JD298789 - Sequence 279813 from Patent EP1572962.
JD399025 - Sequence 380049 from Patent EP1572962.
JD163189 - Sequence 144213 from Patent EP1572962.
LF211376 - JP 2014500723-A/18879: Polycomb-Associated Non-Coding RNAs.
LF345953 - JP 2014500723-A/153456: Polycomb-Associated Non-Coding RNAs.
LF383497 - JP 2014500723-A/191000: Polycomb-Associated Non-Coding RNAs.
MA581530 - JP 2018138019-A/153456: Polycomb-Associated Non-Coding RNAs.
MA619074 - JP 2018138019-A/191000: Polycomb-Associated Non-Coding RNAs.
MA446953 - JP 2018138019-A/18879: Polycomb-Associated Non-Coding RNAs.
AK316111 - Homo sapiens cDNA, FLJ79010 complete cds, highly similar to Transcription factor 7-like 2.
AK303684 - Homo sapiens cDNA FLJ59810 complete cds, highly similar to Transcription factor 7-like 2.
AK296305 - Homo sapiens cDNA FLJ59705 complete cds, highly similar to Transcription factor 7-like 2.
AK074705 - Homo sapiens cDNA FLJ90224 fis, clone NT2RM1000789, highly similar to Mus musculus transcription factor 7-like 2, T-cell specific, HMG-box (Tcf7l2), mRNA.
AB034691 - Homo sapiens TCF-4B mRNA for TCF-4 splice form B, partial cds.
JD206620 - Sequence 187644 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9NQB0 (Reactome details) participates in the following event(s):

R-HSA-8944352 TCF/LEF binds WNT promoters
R-HSA-5334050 TCF7L2/TCF7L1 bind CTBP1 to repress WNT target genes
R-HSA-3364014 Recruitment of SET1 methyltransferase complex
R-HSA-201712 Beta-catenin:TCF associates with BCL9 and PYGO
R-HSA-3322422 Beta-catenin recruits SMARCA4
R-HSA-3322424 Beta-catenin recruits CDC73 and LEO1
R-HSA-3322427 Beta-catenin recruits CBP/p300
R-HSA-3451153 Beta-catenin recruits TRRAP/KAT5 HAT components
R-HSA-5665608 TCF:Beta-catenin binds SOX proteins
R-HSA-8944362 TCF/LEF:CTNNB1 bind canonical WNT target promoters
R-HSA-3299569 Beta-catenin displaces TLE:HDAC1 from TCF/LEF
R-HSA-8944349 TLE tetramers bind TCF/LEF at WNT promoters
R-HSA-4411383 NLK phosphorylates TCF/LEF
R-HSA-4411351 TCF/LEF:CTNNB1 bind the AXIN2 gene
R-HSA-8951442 CTNNB1:TCF7L2,LEF1 binds the CCND1 gene promoter
R-HSA-8951428 RUNX3 binds CTNNB1:TCF7L2,(LEF1,TCF7L1,TCF7)
R-HSA-4411367 TCF7L1/TCF7L2/LEF1:CTNNB1 bind the MYC gene
R-HSA-3364026 SET1 complex trimethylates H3K4 at the MYC gene
R-HSA-4641231 TLE recruits HDAC1 to WNT promoters
R-HSA-3451147 KAT5 HAT complex acetylates TCF4 gene at histone H4
R-HSA-4641265 Repression of WNT target genes
R-HSA-5339700 TCF7L2 mutants don't bind CTBP
R-HSA-201722 Formation of the beta-catenin:TCF transactivating complex
R-HSA-3769402 Deactivation of the beta-catenin transactivating complex
R-HSA-4086398 Ca2+ pathway
R-HSA-195253 Degradation of beta-catenin by the destruction complex
R-HSA-4411364 Binding of TCF/LEF:CTNNB1 to target gene promoters
R-HSA-8951430 RUNX3 regulates WNT signaling
R-HSA-4791275 Signaling by WNT in cancer
R-HSA-201681 TCF dependent signaling in response to WNT
R-HSA-3858494 Beta-catenin independent WNT signaling
R-HSA-195721 Signaling by WNT
R-HSA-8878159 Transcriptional regulation by RUNX3
R-HSA-5663202 Diseases of signal transduction
R-HSA-162582 Signal Transduction
R-HSA-212436 Generic Transcription Pathway
R-HSA-1643685 Disease
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: B4DRJ8, B9X074, C6ZRJ8, C6ZRK0, E2GH14, E2GH19, E2GH20, E2GH24, E2GH25, E9PFH9, ENST00000355995.1, ENST00000355995.2, ENST00000355995.3, ENST00000355995.4, ENST00000355995.5, ENST00000355995.6, ENST00000355995.7, ENST00000355995.8, F8W742, F8W7T5, NM_001367943, O00185, Q9NQB0, Q9NQB1, Q9NQB2, Q9NQB3, Q9NQB4, Q9NQB5, Q9NQB6, Q9NQB7, Q9ULC2, TCF4, TF7L2_HUMAN, uc317zis.1, uc317zis.2
UCSC ID: ENST00000355995.9_7
RefSeq Accession: NM_001367943.1
Protein: Q9NQB0 (aka TF7L2_HUMAN or T7L2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.