Human Gene TCF7L2 (ENST00000355995.9_7) from GENCODE V47lift37
  Description: transcription factor 7 like 2, transcript variant 17 (from RefSeq NM_001367943.1)
Gencode Transcript: ENST00000355995.9_7
Gencode Gene: ENSG00000148737.18_21
Transcript (Including UTRs)
   Position: hg19 chr10:114,710,006-114,927,437 Size: 217,432 Total Exon Count: 15 Strand: +
Coding Region
   Position: hg19 chr10:114,710,516-114,925,731 Size: 215,216 Coding Exon Count: 15 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:114,710,006-114,927,437)mRNA (may differ from genome)Protein (619 aa)
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: TF7L2_HUMAN
DESCRIPTION: RecName: Full=Transcription factor 7-like 2; AltName: Full=HMG box transcription factor 4; AltName: Full=T-cell-specific transcription factor 4; Short=T-cell factor 4; Short=TCF-4; Short=hTCF-4;
FUNCTION: Participates in the Wnt signaling pathway and modulates MYC expression by binding to its promoter in a sequence-specific manner. Acts as repressor in the absence of CTNNB1, and as activator in its presence. Activates transcription from promoters with several copies of the Tcf motif 5'-CCTTTGATC-3' in the presence of CTNNB1. TLE1, TLE2, TLE3 and TLE4 repress transactivation mediated by TCF7L2/TCF4 and CTNNB1. Expression of dominant-negative mutants results in cell-cycle arrest in G1. Necessary for the maintenance of the epithelial stem-cell compartment of the small intestine.
SUBUNIT: Interacts with TGFB1I1 (By similarity). Interacts with CTNNB1 (via the armadillo repeat); forms stable transcription complex. Interacts with EP300. Interacts with NLK. Interacts with CCDC85B (probably through the HMG box); prevents interaction with CTNNB1. Interacts with TNIK. Interacts with MAD2L2; prevents TCF7L2/TCF4 binding to promZIPK/DAPK3oters, negatively modulating its transcriptional activity. Interacts with ZIPK/DAPK3. Interacts with XIAP/BIRC4 and TLE3. Interacts with DDIT3/CHOP.
INTERACTION: P35222:CTNNB1; NbExp=27; IntAct=EBI-924724, EBI-491549; Q9UER7:DAXX; NbExp=5; IntAct=EBI-924724, EBI-77321; P14923:JUP; NbExp=13; IntAct=EBI-924724, EBI-702484; Q13761:RUNX3; NbExp=14; IntAct=EBI-924724, EBI-925990; P12956:XRCC6; NbExp=9; IntAct=EBI-924724, EBI-353208;
SUBCELLULAR LOCATION: Nucleus, PML body. Note=Diffuse pattern. Colocalizes with SUMO1 and PIAS4 in a subset of PML (promyelocytic leukemia) nuclear bodies.
TISSUE SPECIFICITY: Detected in epithelium from small intestine, with the highest expression at the top of the crypts and a gradient of expression from crypt to villus. Detected in colon epithelium and colon cancer, and in epithelium from mammary gland and carcinomas derived therefrom.
DEVELOPMENTAL STAGE: Highly expressed in crypt regions and barely detectable in villi in epithelium from fetal small intestine at week 16. At week 22 expression in villi had increased strongly.
DOMAIN: The promoter-specific activation domain interacts with the transcriptional coactivator EP300.
PTM: In vitro, phosphorylated by TNIK.
PTM: Phosphorylated at Thr-201 and/or Thr-212 by NLK. Phosphorylation by NLK at these sites inhibits DNA-binding by TCF7L2/TCF4, thereby preventing transcriptional activation of target genes of the canonical Wnt/beta-catenin signaling pathway.
PTM: Polysumoylated. Sumoylation is enhanced by PIAS family members and desumoylation is enhanced by SENP2. Sumoylation/desumoylation regulates TCF7L2/TCF4 transcription activity in the Wnt/beta-catenin signaling pathway without altering interaction with CTNNB1 nor binding to DNA.
DISEASE: Note=Constitutive activation and subsequent transactivation of target genes may lead to the maintenance of stem-cell characteristics (cycling and longevity) in cells that should normally undergo terminal differentiation and constitute the primary transforming event in colorectal cancer (CRC).
DISEASE: Genetic variations in TCF7L2 are associated with susceptibility to non-insulin-dependent diabetes mellitus (NIDDM) [MIM:125853]. NIDDM is characterized by an autosomal dominant mode of inheritance, onset during adulthood and insulin resistance.
SIMILARITY: Belongs to the TCF/LEF family.
SIMILARITY: Contains 1 HMG box DNA-binding domain.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

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-  MalaCards Disease Associations
  MalaCards Gene Search: TCF7L2
Diseases sorted by gene-association score: diabetes mellitus, noninsulin-dependent* (140), colorectal cancer (15), tropical calcific pancreatitis (7), gestational diabetes (6), acute insulin response (6), prediabetes syndrome (5), breast cancer (3), prostate cancer (2), glucose metabolism disease (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 17.00 RPKM in Breast - Mammary Tissue
Total median expression: 393.87 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -110.70510-0.217 Picture PostScript Text
3' UTR -378.101706-0.222 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR013558 - CTNNB1-bd_N
IPR009071 - HMG_superfamily
IPR024940 - TCF/LEF

Pfam Domains:
PF00505 - HMG (high mobility group) box
PF08347 - N-terminal CTNNB1 binding
PF09011 - HMG-box domain

SCOP Domains:
47095 - HMG-box

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1JDH - X-ray MuPIT 1JPW - X-ray MuPIT 2GL7 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q9NQB0
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001103 RNA polymerase II repressing transcription factor binding
GO:0003677 DNA binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0005515 protein binding
GO:0008013 beta-catenin binding
GO:0008134 transcription factor binding
GO:0019901 protein kinase binding
GO:0035257 nuclear hormone receptor binding
GO:0043565 sequence-specific DNA binding
GO:0044212 transcription regulatory region DNA binding
GO:0045295 gamma-catenin binding
GO:0070016 armadillo repeat domain binding

Biological Process:
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0001568 blood vessel development
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0007050 cell cycle arrest
GO:0007223 Wnt signaling pathway, calcium modulating pathway
GO:0008283 cell proliferation
GO:0009749 response to glucose
GO:0010909 positive regulation of heparan sulfate proteoglycan biosynthetic process
GO:0016055 Wnt signaling pathway
GO:0031016 pancreas development
GO:0032024 positive regulation of insulin secretion
GO:0032092 positive regulation of protein binding
GO:0032350 regulation of hormone metabolic process
GO:0042593 glucose homeostasis
GO:0043433 negative regulation of sequence-specific DNA binding transcription factor activity
GO:0043570 maintenance of DNA repeat elements
GO:0044334 canonical Wnt signaling pathway involved in positive regulation of epithelial to mesenchymal transition
GO:0045444 fat cell differentiation
GO:0045892 negative regulation of transcription, DNA-templated
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0046827 positive regulation of protein export from nucleus
GO:0048625 myoblast fate commitment
GO:0048660 regulation of smooth muscle cell proliferation
GO:0051897 positive regulation of protein kinase B signaling
GO:0060070 canonical Wnt signaling pathway
GO:0090090 negative regulation of canonical Wnt signaling pathway
GO:1904837 beta-catenin-TCF complex assembly
GO:2000675 negative regulation of type B pancreatic cell apoptotic process
GO:2001237 negative regulation of extrinsic apoptotic signaling pathway

Cellular Component:
GO:0000790 nuclear chromatin
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0016605 PML body
GO:0032993 protein-DNA complex
GO:0070369 beta-catenin-TCF7L2 complex


-  Descriptions from all associated GenBank mRNAs
  AK225809 - Homo sapiens mRNA for Splice isoform 8 of Q9NQB0 variant, clone: FCC130A07.
FJ010174 - Homo sapiens TCF7L2 isoform pFC8A_TCF7L2_ex1-11-13-14 mRNA, complete cds, alternatively spliced.
Y11306 - Homo sapiens mRNA for hTCF-4.
AK315243 - Homo sapiens cDNA, FLJ96245.
FJ010168 - Homo sapiens TCF7L2 isoform pFC8A_TCF7L2_H7_ex1-11-13-13b mRNA, complete cds, alternatively spliced.
FJ010169 - Homo sapiens TCF7L2 isoform pFC8A_TCF7L2_B1_ex1-11-12-13-13b mRNA, complete cds, alternatively spliced.
FJ010172 - Homo sapiens TCF7L2 isoform pFC8A_TCF7L2_B8_ex1-11-14 mRNA, complete cds, alternatively spliced.
FJ010170 - Homo sapiens TCF7L2 isoform pFC8A_TCF7L2_ex1-11-12-14 mRNA, complete cds, alternatively spliced.
FJ010166 - Homo sapiens TCF7L2 isoform pFC8A_TCF7L2_A3,ex1-12,13,13a mRNA, complete cds, alternatively spliced.
FJ010167 - Homo sapiens TCF7L2 isoform pFC8A_TCF7L2_D4,ex1-11-13a-14 mRNA, complete cds, alternatively spliced.
BC032656 - Homo sapiens transcription factor 7-like 2 (T-cell specific, HMG-box), mRNA (cDNA clone MGC:44932 IMAGE:5533185), complete cds.
FJ010171 - Homo sapiens TCF7L2 isoform pFC8A_TCF7L2_B4_ex1-no4-11-14 mRNA, complete cds, alternatively spliced.
AK299295 - Homo sapiens cDNA FLJ60833 complete cds, highly similar to Transcription factor 7-like 2.
KJ892257 - Synthetic construct Homo sapiens clone ccsbBroadEn_01651 TCF7L2 gene, encodes complete protein.
AB451266 - Homo sapiens TCF7L2 mRNA for transcription factor 7-like 2, complete cds, clone: FLJ08086AAAN.
AB440195 - Homo sapiens TCF7L2 mRNA for transcription factor 7-like 2 isoform, complete cds.
CR536574 - Homo sapiens full open reading frame cDNA clone RZPDo834H0722D for gene TCF7L2, transcription factor 7-like 2 (T-cell specific, HMG-box); complete cds, incl. stopcodon.
HM352838 - Homo sapiens T-cell factor-4 variant F (TCF7L2) mRNA, complete cds, alternatively spliced.
HM352839 - Homo sapiens T-cell factor-4 variant K (TCF7L2) mRNA, complete cds, alternatively spliced.
HM352840 - Homo sapiens T-cell factor-4 variant D (TCF7L2) mRNA, complete cds, alternatively spliced.
HM352841 - Homo sapiens T-cell factor-4 variant H (TCF7L2) mRNA, complete cds, alternatively spliced.
HM352842 - Homo sapiens T-cell factor-4 variant B (TCF7L2) mRNA, complete cds, alternatively spliced.
HM352843 - Homo sapiens T-cell factor-4 variant C (TCF7L2) mRNA, complete cds, alternatively spliced.
HM352844 - Homo sapiens T-cell factor-4 variant I (TCF7L2) mRNA, complete cds, alternatively spliced.
HM352845 - Homo sapiens T-cell factor-4 variant X2 (TCF7L2) mRNA, complete cds, alternatively spliced.
HM352846 - Homo sapiens T-cell factor-4 variant G (TCF7L2) mRNA, complete cds, alternatively spliced.
HM352847 - Homo sapiens T-cell factor-4 variant J (TCF7L2) mRNA, complete cds, alternatively spliced.
HM352848 - Homo sapiens T-cell factor-4 variant E (TCF7L2) mRNA, complete cds, alternatively spliced.
HM352849 - Homo sapiens T-cell factor-4 variant A (TCF7L2) mRNA, complete cds, alternatively spliced.
HM352850 - Homo sapiens T-cell factor-4 variant M (TCF7L2) mRNA, complete cds, alternatively spliced.
HM352851 - Homo sapiens T-cell factor-4 variant L (TCF7L2) mRNA, complete cds, alternatively spliced.
MF772717 - Homo sapiens transcription factor 7 like 2 isoform E1 (TCF7L2) mRNA, complete cds.
MF772718 - Homo sapiens transcription factor 7 like 2 isoform E4 (TCF7L2) mRNA, complete cds.
BX648364 - Homo sapiens mRNA; cDNA DKFZp686K06191 (from clone DKFZp686K06191).
FJ010164 - Homo sapiens TCF7L2 isoform pFC8A_TCF7L2_D5_ex3-11,12,13a,14 mRNA, complete cds, alternatively spliced.
FJ010165 - Homo sapiens TCF7L2 isoform pFC8A_TCF7L2_D5_ex3,4a-11,12,13a,14 mRNA, complete cds, alternatively spliced.
FJ010173 - Homo sapiens TCF7L2 isoform pFC8A_TCF7L2_H2_ex3-11-12-13-14 mRNA, complete cds, alternatively spliced.
AK301483 - Homo sapiens cDNA FLJ54563 complete cds, highly similar to Transcription factor 7-like 2.
JD391258 - Sequence 372282 from Patent EP1572962.
JD402306 - Sequence 383330 from Patent EP1572962.
JD390508 - Sequence 371532 from Patent EP1572962.
JD415834 - Sequence 396858 from Patent EP1572962.
JD298789 - Sequence 279813 from Patent EP1572962.
JD399025 - Sequence 380049 from Patent EP1572962.
JD163189 - Sequence 144213 from Patent EP1572962.
LF211376 - JP 2014500723-A/18879: Polycomb-Associated Non-Coding RNAs.
LF345953 - JP 2014500723-A/153456: Polycomb-Associated Non-Coding RNAs.
LF383497 - JP 2014500723-A/191000: Polycomb-Associated Non-Coding RNAs.
MA581530 - JP 2018138019-A/153456: Polycomb-Associated Non-Coding RNAs.
MA619074 - JP 2018138019-A/191000: Polycomb-Associated Non-Coding RNAs.
MA446953 - JP 2018138019-A/18879: Polycomb-Associated Non-Coding RNAs.
AK316111 - Homo sapiens cDNA, FLJ79010 complete cds, highly similar to Transcription factor 7-like 2.
AK303684 - Homo sapiens cDNA FLJ59810 complete cds, highly similar to Transcription factor 7-like 2.
AK296305 - Homo sapiens cDNA FLJ59705 complete cds, highly similar to Transcription factor 7-like 2.
AK074705 - Homo sapiens cDNA FLJ90224 fis, clone NT2RM1000789, highly similar to Mus musculus transcription factor 7-like 2, T-cell specific, HMG-box (Tcf7l2), mRNA.
AB034691 - Homo sapiens TCF-4B mRNA for TCF-4 splice form B, partial cds.
JD206620 - Sequence 187644 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9NQB0 (Reactome details) participates in the following event(s):

R-HSA-8944352 TCF/LEF binds WNT promoters
R-HSA-5334050 TCF7L2/TCF7L1 bind CTBP1 to repress WNT target genes
R-HSA-3364014 Recruitment of SET1 methyltransferase complex
R-HSA-201712 Beta-catenin:TCF associates with BCL9 and PYGO
R-HSA-3322422 Beta-catenin recruits SMARCA4
R-HSA-3322424 Beta-catenin recruits CDC73 and LEO1
R-HSA-3322427 Beta-catenin recruits CBP/p300
R-HSA-3451153 Beta-catenin recruits TRRAP/KAT5 HAT components
R-HSA-5665608 TCF:Beta-catenin binds SOX proteins
R-HSA-8944362 TCF/LEF:CTNNB1 bind canonical WNT target promoters
R-HSA-3299569 Beta-catenin displaces TLE:HDAC1 from TCF/LEF
R-HSA-8944349 TLE tetramers bind TCF/LEF at WNT promoters
R-HSA-4411383 NLK phosphorylates TCF/LEF
R-HSA-4411351 TCF/LEF:CTNNB1 bind the AXIN2 gene
R-HSA-8951442 CTNNB1:TCF7L2,LEF1 binds the CCND1 gene promoter
R-HSA-8951428 RUNX3 binds CTNNB1:TCF7L2,(LEF1,TCF7L1,TCF7)
R-HSA-4411367 TCF7L1/TCF7L2/LEF1:CTNNB1 bind the MYC gene
R-HSA-3364026 SET1 complex trimethylates H3K4 at the MYC gene
R-HSA-4641231 TLE recruits HDAC1 to WNT promoters
R-HSA-3451147 KAT5 HAT complex acetylates TCF4 gene at histone H4
R-HSA-4641265 Repression of WNT target genes
R-HSA-5339700 TCF7L2 mutants don't bind CTBP
R-HSA-201722 Formation of the beta-catenin:TCF transactivating complex
R-HSA-3769402 Deactivation of the beta-catenin transactivating complex
R-HSA-4086398 Ca2+ pathway
R-HSA-195253 Degradation of beta-catenin by the destruction complex
R-HSA-4411364 Binding of TCF/LEF:CTNNB1 to target gene promoters
R-HSA-8951430 RUNX3 regulates WNT signaling
R-HSA-4791275 Signaling by WNT in cancer
R-HSA-201681 TCF dependent signaling in response to WNT
R-HSA-3858494 Beta-catenin independent WNT signaling
R-HSA-195721 Signaling by WNT
R-HSA-8878159 Transcriptional regulation by RUNX3
R-HSA-5663202 Diseases of signal transduction
R-HSA-162582 Signal Transduction
R-HSA-212436 Generic Transcription Pathway
R-HSA-1643685 Disease
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: B4DRJ8, B9X074, C6ZRJ8, C6ZRK0, E2GH14, E2GH19, E2GH20, E2GH24, E2GH25, E9PFH9, ENST00000355995.1, ENST00000355995.2, ENST00000355995.3, ENST00000355995.4, ENST00000355995.5, ENST00000355995.6, ENST00000355995.7, ENST00000355995.8, F8W742, F8W7T5, NM_001367943, O00185, Q9NQB0, Q9NQB1, Q9NQB2, Q9NQB3, Q9NQB4, Q9NQB5, Q9NQB6, Q9NQB7, Q9ULC2, TCF4, TF7L2_HUMAN, uc317zis.1, uc317zis.2
UCSC ID: ENST00000355995.9_7
RefSeq Accession: NM_001367943.1
Protein: Q9NQB0 (aka TF7L2_HUMAN or T7L2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.