Human Gene TLK2 (ENST00000346027.10_6) from GENCODE V47lift37
  Description: tousled like kinase 2, transcript variant A (from RefSeq NM_006852.6)
Gencode Transcript: ENST00000346027.10_6
Gencode Gene: ENSG00000146872.19_17
Transcript (Including UTRs)
   Position: hg19 chr17:60,556,186-60,692,842 Size: 136,657 Total Exon Count: 22 Strand: +
Coding Region
   Position: hg19 chr17:60,558,487-60,689,926 Size: 131,440 Coding Exon Count: 21 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:60,556,186-60,692,842)mRNA (may differ from genome)Protein (750 aa)
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-  Comments and Description Text from UniProtKB
  ID: TLK2_HUMAN
DESCRIPTION: RecName: Full=Serine/threonine-protein kinase tousled-like 2; EC=2.7.11.1; AltName: Full=HsHPK; AltName: Full=PKU-alpha; AltName: Full=Tousled-like kinase 2;
FUNCTION: Serine/threonine-protein kinase involved in the process of chromatin assembly and probably also DNA replication, transcription, repair, and chromosome segregation. Phosphorylates the chromatin assembly factors ASF1A AND ASF1B. Phosphorylation of ASF1A prevents its proteasome-mediated degradation, thereby enhancing chromatin assembly. Negative regulator of amino acid starvation-induced autophagy.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
COFACTOR: Magnesium.
ENZYME REGULATION: Cell cycle-regulated, with maximal activity in the S-phase. Rapidly and transiently inhibited by phosphorylation following the generation of DNA double-stranded breaks during S- phase, probably by CHEK1, possibly at Ser-750. This inhibition is cell cycle checkpoint- and ATM-dependent.
SUBUNIT: Monomer and heterodimer with TLK1. Interacts with ASF1A and ASF1B. Association with 14-3-3 proteins such as YWHAZ regulates subcellular location. May also interact with FEZ1/LZTS1 and FEZ2.
INTERACTION: Q15306:IRF4; NbExp=2; IntAct=EBI-1047967, EBI-751345; Q92985:IRF7; NbExp=2; IntAct=EBI-1047967, EBI-968267;
SUBCELLULAR LOCATION: Nucleus. Cytoplasm, perinuclear region. Cytoplasm, cytoskeleton. Note=Colocalizes with the cytoplasmic intermediate filament system during the G1 phase of the cell cycle. Present in the perinuclear region at S phase and in the nucleus at late G2.
TISSUE SPECIFICITY: Ubiquitous. Detected in placenta, fetal liver, kidney, pancreas, heart and skeletal muscle. Highly expressed in testis. Detected in spleen, thymus, colon, ovary, small intestine, prostate and peripheral blood leukocytes.
PTM: Phosphorylated at Ser-750, probably by CHEK1.
SIMILARITY: Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
SIMILARITY: Contains 1 protein kinase domain.
SEQUENCE CAUTION: Sequence=AAF03095.1; Type=Erroneous initiation; Sequence=AAH44925.2; Type=Erroneous initiation; Sequence=BAA20561.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 15.65 RPKM in Testis
Total median expression: 234.04 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -287.90471-0.611 Picture PostScript Text
3' UTR -873.302916-0.299 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF07714 - Protein tyrosine and serine/threonine kinase

SCOP Domains:
158682 - TerB-like
56112 - Protein kinase-like (PK-like)

ModBase Predicted Comparative 3D Structure on Q86UE8
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity

Biological Process:
GO:0001672 regulation of chromatin assembly or disassembly
GO:0006325 chromatin organization
GO:0006468 protein phosphorylation
GO:0006974 cellular response to DNA damage stimulus
GO:0007049 cell cycle
GO:0007059 chromosome segregation
GO:0010507 negative regulation of autophagy
GO:0016310 phosphorylation
GO:0018105 peptidyl-serine phosphorylation
GO:0032435 negative regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0035556 intracellular signal transduction
GO:0071480 cellular response to gamma radiation

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005856 cytoskeleton
GO:0005882 intermediate filament
GO:0048471 perinuclear region of cytoplasm


-  Descriptions from all associated GenBank mRNAs
  BC060511 - Homo sapiens tousled-like kinase 2, mRNA (cDNA clone IMAGE:5811061), partial cds.
BC044925 - Homo sapiens tousled-like kinase 2, mRNA (cDNA clone IMAGE:5297746), partial cds.
AX775745 - Sequence 15 from Patent WO03048202.
AX775747 - Sequence 17 from Patent WO03048202.
AF162667 - Homo sapiens tousled-like kinase 2 (TLK2) mRNA, complete cds.
AK300586 - Homo sapiens cDNA FLJ54483 complete cds, highly similar to Serine/threonine-protein kinase tousled-like 2 (EC 2.7.11.1).
AB004884 - Homo sapiens mRNA for PKU-alpha, partial cds.
AB587495 - Synthetic construct DNA, clone: pF1KB9116, Homo sapiens TLK2 gene for tousled-like kinase 2, without stop codon, in Flexi system.
KJ902186 - Synthetic construct Homo sapiens clone ccsbBroadEn_11580 TLK2 gene, encodes complete protein.
KJ905410 - Synthetic construct Homo sapiens clone ccsbBroadEn_14984 TLK2 gene, encodes complete protein.
E09282 - cDNA encoding human protein kinase alpha(PKU alpha).
JD399505 - Sequence 380529 from Patent EP1572962.
JD399506 - Sequence 380530 from Patent EP1572962.
JC506674 - Sequence 42 from Patent EP2733220.
JC506688 - Sequence 56 from Patent EP2733220.
JC737786 - Sequence 42 from Patent WO2014075939.
JC737800 - Sequence 56 from Patent WO2014075939.
JD186078 - Sequence 167102 from Patent EP1572962.
JD199848 - Sequence 180872 from Patent EP1572962.
JD071828 - Sequence 52852 from Patent EP1572962.
JD174923 - Sequence 155947 from Patent EP1572962.
JD507277 - Sequence 488301 from Patent EP1572962.
JD186639 - Sequence 167663 from Patent EP1572962.
JD297013 - Sequence 278037 from Patent EP1572962.
BX647225 - Homo sapiens mRNA; cDNA DKFZp686H0936 (from clone DKFZp686H0936).
BC013736 - Homo sapiens tousled-like kinase 2, mRNA (cDNA clone IMAGE:3866469), partial cds.
JD361949 - Sequence 342973 from Patent EP1572962.
JD044827 - Sequence 25851 from Patent EP1572962.
JD499927 - Sequence 480951 from Patent EP1572962.
JD520551 - Sequence 501575 from Patent EP1572962.
JD477775 - Sequence 458799 from Patent EP1572962.
JD307526 - Sequence 288550 from Patent EP1572962.
JD314477 - Sequence 295501 from Patent EP1572962.
JD047220 - Sequence 28244 from Patent EP1572962.
JD449346 - Sequence 430370 from Patent EP1572962.
JD063286 - Sequence 44310 from Patent EP1572962.
JD208780 - Sequence 189804 from Patent EP1572962.
JD264173 - Sequence 245197 from Patent EP1572962.
JD438879 - Sequence 419903 from Patent EP1572962.
JD112151 - Sequence 93175 from Patent EP1572962.
JD217433 - Sequence 198457 from Patent EP1572962.
JD478221 - Sequence 459245 from Patent EP1572962.
JD132476 - Sequence 113500 from Patent EP1572962.
JD243166 - Sequence 224190 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: D3DU07, ENST00000346027.1, ENST00000346027.2, ENST00000346027.3, ENST00000346027.4, ENST00000346027.5, ENST00000346027.6, ENST00000346027.7, ENST00000346027.8, ENST00000346027.9, NM_006852, Q86UE8, Q9UKI7, Q9Y4F7, TLK2 , TLK2_HUMAN, uc317xho.1, uc317xho.2
UCSC ID: ENST00000346027.10_6
RefSeq Accession: NM_006852.6
Protein: Q86UE8 (aka TLK2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.