Human Gene TLR5 (ENST00000642603.2_8) from GENCODE V47lift37
  Description: toll like receptor 5 (from RefSeq NM_003268.6)
Gencode Transcript: ENST00000642603.2_8
Gencode Gene: ENSG00000187554.15_17
Transcript (Including UTRs)
   Position: hg19 chr1:223,282,746-223,316,590 Size: 33,845 Total Exon Count: 6 Strand: -
Coding Region
   Position: hg19 chr1:223,283,797-223,286,373 Size: 2,577 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:223,282,746-223,316,590)mRNA (may differ from genome)Protein (858 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: TLR5_HUMAN
DESCRIPTION: RecName: Full=Toll-like receptor 5; AltName: Full=Toll/interleukin-1 receptor-like protein 3; Flags: Precursor;
FUNCTION: Participates in the innate immune response to microbial agents. Mediates detection of bacterial flagellins. Acts via MYD88 and TRAF6, leading to NF-kappa-B activation, cytokine secretion and the inflammatory response.
SUBUNIT: Binds MYD88 via their respective TIR domains (By similarity).
SUBCELLULAR LOCATION: Membrane; Single-pass type I membrane protein (By similarity).
TISSUE SPECIFICITY: Highly expressed in ovary and in peripheral blood leukocytes, especially in monocytes, less in CD11c+ immature dendritic cells. Also detected in prostate and testis.
PTM: Phosphorylated at Ser-805 by PKD/PRKD1; phosphorylation induces the production of inflammatory cytokines.
POLYMORPHISM: Individuals with a common stop codon polymorphism in position 392 are unable to mediate flagellin signaling. This polymorphism acts in a dominant fashion and is associated with susceptibility to pneumonia caused by Legionella pneumophila [MIM:608556]. It also provides protection against systemic lupus erythematosus.
DISEASE: Genetic variation in TLR5 is associated with resistance to systemic lupus erythematosus type 1 (SLEB1) [MIM:601744]. Systemic lupus erythematosus (SLE) is a chronic autoimmune disease with a complex genetic basis. SLE is an inflammatory, and often febrile multisystemic disorder of connective tissue characterized principally by involvement of the skin, joints, kidneys, and serosal membranes. It is thought to represent a failure of the regulatory mechanisms of the autoimmune system.
SIMILARITY: Belongs to the Toll-like receptor family.
SIMILARITY: Contains 15 LRR (leucine-rich) repeats.
SIMILARITY: Contains 1 TIR domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: TLR5
Diseases sorted by gene-association score: legionnaire disease* (594), melioidosis* (583), systemic lupus erythematosus 1* (569), lupus erythematosus (48), systemic lupus erythematosus (29), legionellosis (29), legionnaires' disease (24), suppurative otitis media (13), typhoid fever (12), irak4 deficiency (10), myd88 deficiency (10), pneumonia (9), ocular toxoplasmosis (8), ileitis (7), lemierre's syndrome (6), inflammatory bowel disease (6), inflammatory diarrhea (6), chromosome 1q41-q42 deletion syndrome (6), colorectal cancer (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -179.00607-0.295 Picture PostScript Text
3' UTR -273.201051-0.260 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000483 - Cys-rich_flank_reg_C
IPR001611 - Leu-rich_rpt
IPR003591 - Leu-rich_rpt_typical-subtyp
IPR000157 - TIR_dom

Pfam Domains:
PF00560 - Leucine Rich Repeat
PF01463 - Leucine rich repeat C-terminal domain
PF01582 - TIR domain
PF13306 - BspA type Leucine rich repeat region (6 copies)
PF13676 - TIR domain
PF13855 - Leucine rich repeat

SCOP Domains:
47380 - ROP protein
52047 - RNI-like
52058 - L domain-like
52075 - Outer arm dynein light chain 1
52200 - Toll/Interleukin receptor TIR domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1P95 - Model 3J0A - EM MuPIT


ModBase Predicted Comparative 3D Structure on O60602
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004888 transmembrane signaling receptor activity
GO:0005149 interleukin-1 receptor binding

Biological Process:
GO:0001819 positive regulation of cytokine production
GO:0002376 immune system process
GO:0002755 MyD88-dependent toll-like receptor signaling pathway
GO:0006954 inflammatory response
GO:0007165 signal transduction
GO:0032757 positive regulation of interleukin-8 production
GO:0034123 positive regulation of toll-like receptor signaling pathway
GO:0034146 toll-like receptor 5 signaling pathway
GO:0042742 defense response to bacterium
GO:0045087 innate immune response
GO:0050707 regulation of cytokine secretion
GO:0071260 cellular response to mechanical stimulus

Cellular Component:
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  LP895189 - Sequence 53 from Patent EP3253886.
U88881 - Homo sapiens Toll-like receptor 5 (TLR5) mRNA, partial cds.
AB060695 - Homo sapiens TLR5 mRNA for Toll-like receptor 5, complete cds.
AF051151 - Homo sapiens Toll/interleukin-1 receptor-like protein 3 (TIL3) mRNA, complete cds.
BC109118 - Homo sapiens toll-like receptor 5, mRNA (cDNA clone MGC:126430 IMAGE:40035617), complete cds.
BC109119 - Homo sapiens toll-like receptor 5, mRNA (cDNA clone MGC:126431 IMAGE:40035618), complete cds.
JD507901 - Sequence 488925 from Patent EP1572962.
AB445645 - Homo sapiens TLR5 mRNA for toll-like receptor 5, complete cds.
KJ897681 - Synthetic construct Homo sapiens clone ccsbBroadEn_07075 TLR5 gene, encodes complete protein.
JD152795 - Sequence 133819 from Patent EP1572962.
JD562570 - Sequence 543594 from Patent EP1572962.
JD509724 - Sequence 490748 from Patent EP1572962.
JD145184 - Sequence 126208 from Patent EP1572962.
JD524970 - Sequence 505994 from Patent EP1572962.
JD183510 - Sequence 164534 from Patent EP1572962.
JD309220 - Sequence 290244 from Patent EP1572962.
JD518625 - Sequence 499649 from Patent EP1572962.
JD318910 - Sequence 299934 from Patent EP1572962.
JD420629 - Sequence 401653 from Patent EP1572962.
JD479417 - Sequence 460441 from Patent EP1572962.
JD407809 - Sequence 388833 from Patent EP1572962.
JD256894 - Sequence 237918 from Patent EP1572962.
JD258879 - Sequence 239903 from Patent EP1572962.
JD353172 - Sequence 334196 from Patent EP1572962.
JD128697 - Sequence 109721 from Patent EP1572962.
JD422343 - Sequence 403367 from Patent EP1572962.
JD419390 - Sequence 400414 from Patent EP1572962.
JD325724 - Sequence 306748 from Patent EP1572962.
JD388804 - Sequence 369828 from Patent EP1572962.
JD413627 - Sequence 394651 from Patent EP1572962.
JD270510 - Sequence 251534 from Patent EP1572962.
JD457393 - Sequence 438417 from Patent EP1572962.
JD457394 - Sequence 438418 from Patent EP1572962.
JD405614 - Sequence 386638 from Patent EP1572962.
JD405613 - Sequence 386637 from Patent EP1572962.
JD271272 - Sequence 252296 from Patent EP1572962.
JD422342 - Sequence 403366 from Patent EP1572962.
JD419389 - Sequence 400413 from Patent EP1572962.
JD395390 - Sequence 376414 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein O60602 (Reactome details) participates in the following event(s):

R-HSA-188025 Flagellin binds to TLR5
R-HSA-975866 MyD88 forms a complex with the activated TLR receptor
R-HSA-975880 MyD88 oligomerization within the complex of activated TLR:MyD88
R-HSA-975873 IRAK4 binds to MyD88 bound to the activated TLR5 or 10 receptor
R-HSA-975852 IRAK1/or IRAK2 binds to the activated IRAK4 :oligo MyD88:activated TLR5 or 10 complex
R-HSA-975865 IRAK4 autophosphorylation within the complex activated TLR:MyD88
R-HSA-975879 Dissociation of hp-IRAK1:TRAF6 or IRAK2:TRAF6-oligomer from the activated TLR5 or 10:oligo-Myd88:p-IRAK4 complex
R-HSA-975861 Phosphorylation of IRAK2 bound to the activated IRAK4:MyD88 oligomerl:activated TLR5 or 10 complex
R-HSA-975878 First phosphorylation of IRAK1 by IRAK4 bound to MyD88:activated TLR
R-HSA-975874 Second phosphorylation of IRAK1 by IRAK4 bound to MyD88:activated TLR complex
R-HSA-975853 Multiple IRAK1 autophosphorylation within the complex p-IRAK4:oligo MyD88:activated TLR
R-HSA-975857 TRAF6 binds to hp- IRAK1 or p-IRAK2
R-HSA-168176 Toll Like Receptor 5 (TLR5) Cascade
R-HSA-168898 Toll-Like Receptors Cascades
R-HSA-5602680 MyD88 deficiency (TLR5)
R-HSA-975871 MyD88 cascade initiated on plasma membrane
R-HSA-168249 Innate Immune System
R-HSA-5602358 Diseases associated with the TLR signaling cascade
R-HSA-5603037 IRAK4 deficiency (TLR5)
R-HSA-168142 Toll Like Receptor 10 (TLR10) Cascade
R-HSA-168256 Immune System
R-HSA-5260271 Diseases of Immune System
R-HSA-1643685 Disease

-  Other Names for This Gene
  Alternate Gene Symbols: B1AZ05, B3Y633, B9VJ63, D1CS80, D3DTB8, ENST00000642603.1, NM_003268, O15456, O60602, Q32MI2, Q32MI3, TIL3, TLR5_HUMAN, uc328iwg.1, uc328iwg.2
UCSC ID: ENST00000642603.2_8
RefSeq Accession: NM_003268.6
Protein: O60602 (aka TLR5_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.