Human Gene TMEM126A (ENST00000304511.7_4) from GENCODE V47lift37
  Description: transmembrane protein 126A, transcript variant 1 (from RefSeq NM_032273.4)
Gencode Transcript: ENST00000304511.7_4
Gencode Gene: ENSG00000171202.7_5
Transcript (Including UTRs)
   Position: hg19 chr11:85,359,011-85,367,586 Size: 8,576 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg19 chr11:85,361,300-85,367,545 Size: 6,246 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:85,359,011-85,367,586)mRNA (may differ from genome)Protein (195 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: T126A_HUMAN
DESCRIPTION: RecName: Full=Transmembrane protein 126A;
SUBCELLULAR LOCATION: Membrane; Multi-pass membrane protein (Potential). Mitochondrion.
TISSUE SPECIFICITY: Strongly expressed in brain, cerebellum, skeletal muscle, testis. High expression also found in fetal brain, fetal retinal pigmentary epithelium, and fetal retina.
DISEASE: Defects in TMEM126A are the cause of optic atrophy type 7 (OPA7) [MIM:612989]. A hereditary condition that features progressive visual loss in association with optic atrophy. Atrophy of the optic disk indicates a deficiency in the number of nerve fibers which arise in the retina and converge to form the optic disk, optic nerve, optic chiasm and optic tracts. OPA7 is an autosomal recessive juvenile-onset optic atrophy characterized by severe bilateral deficiency in visual acuity, optic disk pallor, and central scotoma.
SIMILARITY: Belongs to the TMEM126 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: TMEM126A
Diseases sorted by gene-association score: optic atrophy 7* (1369), scotoma (18), auditory neuropathy (14), optic atrophy plus syndrome (5), leber optic atrophy (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 30.54 RPKM in Heart - Left Ventricle
Total median expression: 861.97 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -39.80130-0.306 Picture PostScript Text
3' UTR 0.00410.000 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR009801 - DUF1370_TMEM126

Pfam Domains:
PF07114 - Transmembrane protein 126

ModBase Predicted Comparative 3D Structure on Q9H061
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003674 molecular_function

Biological Process:
GO:0021554 optic nerve development

Cellular Component:
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  LF207770 - JP 2014500723-A/15273: Polycomb-Associated Non-Coding RNAs.
AL136941 - Homo sapiens mRNA; cDNA DKFZp586C1924 (from clone DKFZp586C1924).
AK312081 - Homo sapiens cDNA, FLJ92362.
BC007875 - Homo sapiens transmembrane protein 126A, mRNA (cDNA clone MGC:14138 IMAGE:3948518), complete cds.
JD209094 - Sequence 190118 from Patent EP1572962.
JD098756 - Sequence 79780 from Patent EP1572962.
JD473734 - Sequence 454758 from Patent EP1572962.
AB528253 - Synthetic construct DNA, clone: pF1KE0118, Homo sapiens TMEM126A gene for transmembrane protein 126A, without stop codon, in Flexi system.
AM392856 - Synthetic construct Homo sapiens clone IMAGE:100001875 for hypothetical protein (TMEM126A gene).
LF368677 - JP 2014500723-A/176180: Polycomb-Associated Non-Coding RNAs.
LF368676 - JP 2014500723-A/176179: Polycomb-Associated Non-Coding RNAs.
LF368675 - JP 2014500723-A/176178: Polycomb-Associated Non-Coding RNAs.
MA604254 - JP 2018138019-A/176180: Polycomb-Associated Non-Coding RNAs.
MA604253 - JP 2018138019-A/176179: Polycomb-Associated Non-Coding RNAs.
MA604252 - JP 2018138019-A/176178: Polycomb-Associated Non-Coding RNAs.
MA443347 - JP 2018138019-A/15273: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: B2R570, E9PI16, ENST00000304511.1, ENST00000304511.2, ENST00000304511.3, ENST00000304511.4, ENST00000304511.5, ENST00000304511.6, NM_032273, Q9H061, T126A_HUMAN, uc317nlh.1, uc317nlh.2
UCSC ID: ENST00000304511.7_4
RefSeq Accession: NM_032273.4
Protein: Q9H061 (aka T126A_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.