Human Gene STING1 (ENST00000330794.9_7) from GENCODE V47lift37
  Description: stimulator of interferon response cGAMP interactor 1, transcript variant 1 (from RefSeq NM_198282.4)
Gencode Transcript: ENST00000330794.9_7
Gencode Gene: ENSG00000184584.14_17
Transcript (Including UTRs)
   Position: hg19 chr5:138,855,118-138,862,343 Size: 7,226 Total Exon Count: 8 Strand: -
Coding Region
   Position: hg19 chr5:138,855,846-138,861,289 Size: 5,444 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersGene AllelesRNA-Seq Expression
RNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathways
Other NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:138,855,118-138,862,343)mRNA (may differ from genome)Protein (379 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
OMIMPubMedReactomeUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: TM173_HUMAN
DESCRIPTION: RecName: Full=Transmembrane protein 173; AltName: Full=Endoplasmic reticulum interferon stimulator; Short=ERIS; AltName: Full=Mediator of IRF3 activation; Short=hMITA; AltName: Full=Stimulator of interferon genes protein; Short=hSTING;
FUNCTION: Facilitator of innate immune signaling that promotes the production of type I interferon (IFN-alpha and IFN-beta). Innate immune response is triggered in response to non-CpG double- stranded DNA from viruses and bacteria delivered to the cytoplasm. Able to activate both NF-kappa-B and IRF3 transcription pathways to induce expression of type I interferon and exert a potent anti- viral state following expression. May be involved in translocon function, the translocon possibly being able to influence the induction of type I interferons. May be involved in transduction of apoptotic signals via its association with the major histocompatibility complex class II (MHC-II). Mediates death signaling via activation of the extracellular signal-regulated kinase (ERK) pathway.
SUBUNIT: Associates with the MHC-II complex (By similarity). Homodimer; 'Lys-63'-linked ubiquitination at Lys-150 is required for homodimerization. Interacts with DDX58/RIG-I, MAVS and SSR2. Interacts with RNF5 and TRIM56. Interacts with TBK1; when homodimer, leading to subsequent production of IFN-beta. Interacts with IFIT1 and IFIT2.
INTERACTION: Q96A33:CCDC47; NbExp=2; IntAct=EBI-2800345, EBI-720151; P39656:DDOST; NbExp=2; IntAct=EBI-2800345, EBI-358866; Q16666:IFI16; NbExp=2; IntAct=EBI-2800345, EBI-2867186; P51617:IRAK1; NbExp=2; IntAct=EBI-2800345, EBI-358664; O94822:LTN1; NbExp=2; IntAct=EBI-2800345, EBI-1044684; Q96N66:MBOAT7; NbExp=2; IntAct=EBI-2800345, EBI-6116499; O95470:SGPL1; NbExp=2; IntAct=EBI-2800345, EBI-1046170; P42226:STAT6; NbExp=12; IntAct=EBI-2800345, EBI-1186478; P46977:STT3A; NbExp=2; IntAct=EBI-2800345, EBI-719212; O15260:SURF4; NbExp=2; IntAct=EBI-2800345, EBI-1044848;
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane; Multi-pass membrane protein. Mitochondrion outer membrane; Multi-pass membrane protein. Cell membrane; Multi-pass membrane protein (By similarity). Cytoplasm, perinuclear region. Note=In response to double-stranded DNA stimulation, relocalizes to perinuclear region, where the kinase TBK1 is recruited.
TISSUE SPECIFICITY: Ubiquitously expressed.
PTM: Phosphorylated on tyrosine residues upon MHC-II aggregation (By similarity). Phosphorylated on Ser-358 by TBK1, leading to activation and production of IFN-beta.
PTM: Ubiquitinated. 'Lys-63'-linked ubiquitination mediated by TRIM56 at Lys-150 promotes homodimerization and recruitment of the antiviral kinase TBK1 and subsequent production of IFN-beta. 'Lys- 48'-linked polyubiquitination at Lys-150 occurring after viral infection is mediated by RNF5 and leads to proteasomal degradation.
SIMILARITY: Belongs to the TMEM173 family.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

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+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 52.93 RPKM in Lung
Total median expression: 975.60 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -101.90302-0.337 Picture PostScript Text
3' UTR -241.60728-0.332 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  Pfam Domains:
PF15009 - Transmembrane protein 173

Protein Data Bank (PDB) 3-D Structure
MuPIT help
4EF4 - X-ray MuPIT 4EF5 - X-ray MuPIT 4EMT - X-ray MuPIT 4EMU - X-ray MuPIT 4F5D - X-ray MuPIT 4F5E - X-ray MuPIT 4F5W - X-ray MuPIT 4F5Y - X-ray MuPIT 4F9E - X-ray MuPIT 4F9G - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q86WV6
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0005515 protein binding
GO:0008134 transcription factor binding
GO:0019901 protein kinase binding
GO:0031625 ubiquitin protein ligase binding
GO:0035438 cyclic-di-GMP binding
GO:0042802 identical protein binding
GO:0042803 protein homodimerization activity
GO:0061507 cyclic-GMP-AMP binding

Biological Process:
GO:0002218 activation of innate immune response
GO:0002230 positive regulation of defense response to virus by host
GO:0002376 immune system process
GO:0006915 apoptotic process
GO:0016032 viral process
GO:0032092 positive regulation of protein binding
GO:0032479 regulation of type I interferon production
GO:0032481 positive regulation of type I interferon production
GO:0032608 interferon-beta production
GO:0033160 positive regulation of protein import into nucleus, translocation
GO:0035458 cellular response to interferon-beta
GO:0043312 neutrophil degranulation
GO:0045087 innate immune response
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0051091 positive regulation of sequence-specific DNA binding transcription factor activity
GO:0051607 defense response to virus
GO:0071360 cellular response to exogenous dsRNA
GO:0071407 cellular response to organic cyclic compound

Cellular Component:
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005741 mitochondrial outer membrane
GO:0005777 peroxisome
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0005794 Golgi apparatus
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0030659 cytoplasmic vesicle membrane
GO:0030667 secretory granule membrane
GO:0048471 perinuclear region of cytoplasm


-  Descriptions from all associated GenBank mRNAs
  AK129800 - Homo sapiens cDNA FLJ26289 fis, clone DMC06968.
AK095896 - Homo sapiens cDNA FLJ38577 fis, clone HCHON2007650.
AX775913 - Sequence 183 from Patent WO03048202.
LF211008 - JP 2014500723-A/18511: Polycomb-Associated Non-Coding RNAs.
JD290942 - Sequence 271966 from Patent EP1572962.
JD355110 - Sequence 336134 from Patent EP1572962.
JD355159 - Sequence 336183 from Patent EP1572962.
JD335659 - Sequence 316683 from Patent EP1572962.
MF360993 - Homo sapiens STING-beta mRNA, complete cds.
JD478987 - Sequence 460011 from Patent EP1572962.
JD040196 - Sequence 21220 from Patent EP1572962.
LF343170 - JP 2014500723-A/150673: Polycomb-Associated Non-Coding RNAs.
JD252961 - Sequence 233985 from Patent EP1572962.
JD386599 - Sequence 367623 from Patent EP1572962.
JD195324 - Sequence 176348 from Patent EP1572962.
JD230202 - Sequence 211226 from Patent EP1572962.
BC047779 - Homo sapiens transmembrane protein 173, mRNA (cDNA clone MGC:54293 IMAGE:5762441), complete cds.
JD177980 - Sequence 159004 from Patent EP1572962.
JD182819 - Sequence 163843 from Patent EP1572962.
AK290661 - Homo sapiens cDNA FLJ76125 complete cds.
JD250631 - Sequence 231655 from Patent EP1572962.
JD079305 - Sequence 60329 from Patent EP1572962.
JD479373 - Sequence 460397 from Patent EP1572962.
JD380739 - Sequence 361763 from Patent EP1572962.
JD118829 - Sequence 99853 from Patent EP1572962.
JD384392 - Sequence 365416 from Patent EP1572962.
JD122081 - Sequence 103105 from Patent EP1572962.
FJ222241 - Homo sapiens mitochondrial mediator of IRF3 activation (MITA) mRNA, complete cds; nuclear gene for mitochondrial product.
MF622062 - Homo sapiens stimulator of interferon protein (STING) mRNA, complete cds.
HQ448605 - Synthetic construct Homo sapiens clone IMAGE:100072043; CCSB011503_01 transmembrane protein 173 (TMEM173) gene, encodes complete protein.
KJ896071 - Synthetic construct Homo sapiens clone ccsbBroadEn_05465 TMEM173 gene, encodes complete protein.
LF343171 - JP 2014500723-A/150674: Polycomb-Associated Non-Coding RNAs.
KF430638 - Homo sapiens MITA variant (MITA) mRNA, complete cds, alternatively spliced.
LF343172 - JP 2014500723-A/150675: Polycomb-Associated Non-Coding RNAs.
CU690508 - Synthetic construct Homo sapiens gateway clone IMAGE:100021388 5' read TMEM173 mRNA.
MS839216 - Sequence 329 from Patent WO2017013436.
MS839217 - Sequence 330 from Patent WO2017013436.
LF343173 - JP 2014500723-A/150676: Polycomb-Associated Non-Coding RNAs.
JD103866 - Sequence 84890 from Patent EP1572962.
JD111354 - Sequence 92378 from Patent EP1572962.
JD143085 - Sequence 124109 from Patent EP1572962.
JD142882 - Sequence 123906 from Patent EP1572962.
JD171480 - Sequence 152504 from Patent EP1572962.
JD400334 - Sequence 381358 from Patent EP1572962.
JD302028 - Sequence 283052 from Patent EP1572962.
JD287580 - Sequence 268604 from Patent EP1572962.
JD521107 - Sequence 502131 from Patent EP1572962.
JD398038 - Sequence 379062 from Patent EP1572962.
JD549718 - Sequence 530742 from Patent EP1572962.
MA790378 - JP 2018524990-A/329: Molecular Diagnostic Test for Cancer.
MA790379 - JP 2018524990-A/330: Molecular Diagnostic Test for Cancer.
MH201427 - Homo sapiens STING isoform 1 (TMEM173) mRNA, complete cds.
MH201428 - Homo sapiens STING isoform 2 (TMEM173) mRNA, complete cds.
MH201429 - Homo sapiens STING isoform 3 (TMEM173) mRNA, complete cds.
MA578747 - JP 2018138019-A/150673: Polycomb-Associated Non-Coding RNAs.
MA578748 - JP 2018138019-A/150674: Polycomb-Associated Non-Coding RNAs.
MA578749 - JP 2018138019-A/150675: Polycomb-Associated Non-Coding RNAs.
MA578750 - JP 2018138019-A/150676: Polycomb-Associated Non-Coding RNAs.
MA446585 - JP 2018138019-A/18511: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q86WV6 (Reactome details) participates in the following event(s):

R-HSA-1964496 STING binds TRIM32 or TRIM56
R-HSA-3134800 STING dimerization
R-HSA-3134804 STING ubiquitination by TRIM32 or TRIM56
R-HSA-1834939 STING recruits TBK1 and IRF3
R-HSA-3249378 STING recruits TBK1 and STAT6
R-HSA-6798743 Exocytosis of secretory granule membrane proteins
R-HSA-2396002 TBK1 is phosphorylated within STING:TBK1:IRF3 complex
R-HSA-2396007 IRF3 is phosphorylated by TBK1
R-HSA-3249392 NLRP4 and DTX4 associate with p-S172-TBK1 within STING:TBK1:IRF3
R-HSA-3249371 TBK1 phosphorylates STAT6 at Ser407
R-HSA-3249390 TBK1 is phosphorylated within STING:TBK1:STAT6 complex
R-HSA-8948709 DTX4 ubiquitinates p-S172-TBK1 within NLRP4:DTX4:STING:TBK1:IRF3
R-HSA-3134975 Regulation of innate immune responses to cytosolic DNA
R-HSA-1834941 STING mediated induction of host immune responses
R-HSA-1834949 Cytosolic sensors of pathogen-associated DNA
R-HSA-3270619 IRF3-mediated induction of type I IFN
R-HSA-3249367 STAT6-mediated induction of chemokines
R-HSA-6798695 Neutrophil degranulation
R-HSA-168249 Innate Immune System
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: A8K3P6, B6EB35, D6RBX0, D6RE01, D6RID9, ENST00000330794.1, ENST00000330794.2, ENST00000330794.3, ENST00000330794.4, ENST00000330794.5, ENST00000330794.6, ENST00000330794.7, ENST00000330794.8, ERIS , MITA , NM_198282, Q86WV6, STING , STING1 , STING_HUMAN, TMEM173 , uc317tba.1, uc317tba.2
UCSC ID: ENST00000330794.9_7
RefSeq Accession: NM_198282.4
Protein: Q86WV6 (aka TM173_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.