Human Gene TNIP2 (ENST00000315423.12_14) from GENCODE V47lift37
  Description: TNFAIP3 interacting protein 2, transcript variant 1 (from RefSeq NM_024309.4)
Gencode Transcript: ENST00000315423.12_14
Gencode Gene: ENSG00000168884.15_15
Transcript (Including UTRs)
   Position: hg19 chr4:2,743,375-2,758,063 Size: 14,689 Total Exon Count: 6 Strand: -
Coding Region
   Position: hg19 chr4:2,743,984-2,758,016 Size: 14,033 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr4:2,743,375-2,758,063)mRNA (may differ from genome)Protein (429 aa)
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WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: TNIP2_HUMAN
DESCRIPTION: RecName: Full=TNFAIP3-interacting protein 2; AltName: Full=A20-binding inhibitor of NF-kappa-B activation 2; Short=ABIN-2; AltName: Full=Fetal liver LKB1-interacting protein;
FUNCTION: Inhibits NF-kappa-B activation by blocking the interaction of RIPK1 with its downstream effector NEMO/IKBKG. Forms a ternary complex with NFKB1 and MAP3K8 but appears to function upstream of MAP3K8 in the TLR4 signaling pathway that regulates MAP3K8 activation. Involved in activation of the MEK/ERK signaling pathway during innate immune response; this function seems to be stimulus- and cell type specific. Required for stability of MAP3K8. Involved in regulation of apoptosis in endothelial cells; promotes TEK agonist-stimulated endothelial survival. May act as transcriptional coactivator when translocated to the nucleus. Enhances CHUK-mediated NF-kappa-B activation involving NF-kappa-B p50-p65 and p50-c-Rel complexes.
SUBUNIT: Interacts with STK11/LKB1, TNFAIP3, IKBKG, NFKB1, MAP3K8, TEK, RIPK1, CHUK, IKBKB and SMARCD1. Interacts with polyubiquitin.
INTERACTION: Q9Y6K9:IKBKG; NbExp=6; IntAct=EBI-359372, EBI-81279; P41279:MAP3K8; NbExp=8; IntAct=EBI-359372, EBI-354900; P19838-1:NFKB1; NbExp=8; IntAct=EBI-359372, EBI-1452239; Q15831:STK11; NbExp=5; IntAct=EBI-359372, EBI-306838;
SUBCELLULAR LOCATION: Cytoplasm. Nucleus (Probable).
TISSUE SPECIFICITY: Ubiquitously expressed in all tissues examined.
PTM: In vitro phosphorylated by CHUK.
PTM: Ubiquitinated; undergoes 'Lys-48'-linked polyubiquitination probably leading to constitutive proteasomal degradation which can be impaired by IKK-A/CHUK or IKBKB probbaly involving deubiquitination.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 31.93 RPKM in Small Intestine - Terminal Ileum
Total median expression: 745.11 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -21.0047-0.447 Picture PostScript Text
3' UTR -228.80609-0.376 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR022008 - EABR

Pfam Domains:
PF12180 - TSG101 and ALIX binding domain of CEP55

ModBase Predicted Comparative 3D Structure on Q8NFZ5
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0019901 protein kinase binding
GO:0031593 polyubiquitin binding
GO:0046872 metal ion binding
GO:0070530 K63-linked polyubiquitin binding

Biological Process:
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006915 apoptotic process
GO:0006954 inflammatory response
GO:0007249 I-kappaB kinase/NF-kappaB signaling
GO:0016579 protein deubiquitination
GO:0023035 CD40 signaling pathway
GO:0034134 toll-like receptor 2 signaling pathway
GO:0034138 toll-like receptor 3 signaling pathway
GO:0034162 toll-like receptor 9 signaling pathway
GO:0043032 positive regulation of macrophage activation
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0050821 protein stabilization
GO:0050871 positive regulation of B cell activation
GO:0051403 stress-activated MAPK cascade
GO:0070498 interleukin-1-mediated signaling pathway
GO:0071222 cellular response to lipopolysaccharide
GO:2000352 negative regulation of endothelial cell apoptotic process

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  BC002740 - Homo sapiens TNFAIP3 interacting protein 2, mRNA (cDNA clone MGC:4289 IMAGE:3632736), complete cds.
AK026176 - Homo sapiens cDNA: FLJ22523 fis, clone HRC12507.
AK096296 - Homo sapiens cDNA FLJ38977 fis, clone NT2RI2004188, highly similar to Homo sapiens TNFAIP3 interacting protein 2 (TNIP2), mRNA.
AF372839 - Homo sapiens fetal liver LKB1-interacting protein (FLIP1) mRNA, complete cds.
AJ304866 - Homo sapiens mRNA for A20-binding inhibitor of NF-kappaB activation-2 (ABIN-2 gene).
AB590678 - Synthetic construct DNA, clone: pFN21AE1902, Homo sapiens TNIP2 gene for TNFAIP3 interacting protein 2, without stop codon, in Flexi system.
AL137262 - Homo sapiens mRNA; cDNA DKFZp434J1313 (from clone DKFZp434J1313).
JD497947 - Sequence 478971 from Patent EP1572962.
JD146921 - Sequence 127945 from Patent EP1572962.
JD487525 - Sequence 468549 from Patent EP1572962.
JD544502 - Sequence 525526 from Patent EP1572962.
JD446692 - Sequence 427716 from Patent EP1572962.
JD445214 - Sequence 426238 from Patent EP1572962.
JD472671 - Sequence 453695 from Patent EP1572962.
JD341962 - Sequence 322986 from Patent EP1572962.
JD308632 - Sequence 289656 from Patent EP1572962.
JD501236 - Sequence 482260 from Patent EP1572962.
JD559045 - Sequence 540069 from Patent EP1572962.
JD433659 - Sequence 414683 from Patent EP1572962.
JD137849 - Sequence 118873 from Patent EP1572962.
JD443857 - Sequence 424881 from Patent EP1572962.
JD462985 - Sequence 444009 from Patent EP1572962.
JD397945 - Sequence 378969 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q8NFZ5 (Reactome details) participates in the following event(s):

R-HSA-451634 NFKB p105, TPL2 (COT) and ABIN2 form a stable complex
R-HSA-5684261 MAP3K8 is phosphorylated
R-HSA-5684267 IKBKB phosphorylates NFkB p105 within the NFkB p105:TPL2:ABIN2 complex
R-HSA-5684275 IKBKB phosphorylates TPL2 (MAP3K8) at Ser400
R-HSA-5684250 SCF betaTrCP ubiquitinates NFKB p105 within p-S927, S932-NFkB p105:TPL2:ABIN2
R-HSA-5684248 SCF betaTrCP1,2 binds p-NFkB p105:TPL2:ABIN2
R-HSA-5690845 TNIPs bind TNFAIP3 (A20)
R-HSA-5684264 MAP3K8 (TPL2)-dependent MAPK1/3 activation
R-HSA-5689896 Ovarian tumor domain proteases
R-HSA-450294 MAP kinase activation
R-HSA-9020702 Interleukin-1 signaling
R-HSA-5688426 Deubiquitination
R-HSA-166058 MyD88:Mal cascade initiated on plasma membrane
R-HSA-168164 Toll Like Receptor 3 (TLR3) Cascade
R-HSA-448424 Interleukin-17 signaling
R-HSA-937061 TRIF(TICAM1)-mediated TLR4 signaling
R-HSA-975138 TRAF6 mediated induction of NFkB and MAP kinases upon TLR7/8 or 9 activation
R-HSA-975871 MyD88 cascade initiated on plasma membrane
R-HSA-446652 Interleukin-1 family signaling
R-HSA-597592 Post-translational protein modification
R-HSA-166016 Toll Like Receptor 4 (TLR4) Cascade
R-HSA-168179 Toll Like Receptor TLR1:TLR2 Cascade
R-HSA-168188 Toll Like Receptor TLR6:TLR2 Cascade
R-HSA-168898 Toll-Like Receptors Cascades
R-HSA-449147 Signaling by Interleukins
R-HSA-166166 MyD88-independent TLR4 cascade
R-HSA-975155 MyD88 dependent cascade initiated on endosome
R-HSA-168142 Toll Like Receptor 10 (TLR10) Cascade
R-HSA-168176 Toll Like Receptor 5 (TLR5) Cascade
R-HSA-392499 Metabolism of proteins
R-HSA-181438 Toll Like Receptor 2 (TLR2) Cascade
R-HSA-168249 Innate Immune System
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168138 Toll Like Receptor 9 (TLR9) Cascade
R-HSA-168181 Toll Like Receptor 7/8 (TLR7/8) Cascade
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: ABIN2, B1AKS4, B3KTY8, D3DVQ9, ENST00000315423.1, ENST00000315423.10, ENST00000315423.11, ENST00000315423.2, ENST00000315423.3, ENST00000315423.4, ENST00000315423.5, ENST00000315423.6, ENST00000315423.7, ENST00000315423.8, ENST00000315423.9, FLIP1 , NM_024309, Q7L5L2, Q8NFZ5, Q9BQR6, Q9H682, TNIP2 , TNIP2_HUMAN, uc317pur.1, uc317pur.2
UCSC ID: ENST00000315423.12_14
RefSeq Accession: NM_024309.4
Protein: Q8NFZ5 (aka TNIP2_HUMAN)

-  Gene Model Information
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-  Methods, Credits, and Use Restrictions
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