Human Gene TNS3 (ENST00000311160.14_8) from GENCODE V47lift37
  Description: tensin 3 (from RefSeq NM_022748.12)
Gencode Transcript: ENST00000311160.14_8
Gencode Gene: ENSG00000136205.18_15
Transcript (Including UTRs)
   Position: hg19 chr7:47,314,752-47,621,709 Size: 306,958 Total Exon Count: 31 Strand: -
Coding Region
   Position: hg19 chr7:47,317,674-47,479,234 Size: 161,561 Coding Exon Count: 26 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:47,314,752-47,621,709)mRNA (may differ from genome)Protein (1445 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: TENS3_HUMAN
DESCRIPTION: RecName: Full=Tensin-3; AltName: Full=Tensin-like SH2 domain-containing protein 1; AltName: Full=Tumor endothelial marker 6;
FUNCTION: May play a role in actin remodeling. Involved in the dissociation of the integrin-tensin-actin complex. EGF activates TNS4 and down-regulates TNS3 which results in capping the tail of ITGB1. Seems to be involved in mammary cell migration. May be involved in cell migration and bone development (By similarity).
SUBUNIT: EGF promotes the interaction with EGFR. Interacts with PTK2/FAK1 and BCAR1. Tyrosine phosphorylation is critical for these interactions.
INTERACTION: P56945:BCAR1; NbExp=8; IntAct=EBI-1220488, EBI-702093; P12830:CDH1; NbExp=2; IntAct=EBI-1220488, EBI-727477; Q05397:PTK2; NbExp=3; IntAct=EBI-1220488, EBI-702142; P12931:SRC; NbExp=13; IntAct=EBI-1220488, EBI-621482;
SUBCELLULAR LOCATION: Cell junction, focal adhesion.
TISSUE SPECIFICITY: Expressed in umbilical vein endothelial cells, epithelial cells, and fibroblasts cells (at protein level). Highly expressed in thyroid, kidney and placenta. Low expression in heart, skeletal muscle, spleen, liver, and lung. Expressed in tumor endothelial cells. Expression seems to be down-regulated in thyroid tumor tissues and in anaplastic carcinomas.
INDUCTION: Down-regulated by EGF.
PTM: EGF/epidermal growth factor induces tyrosine phosphorylation in a time- and dose-dependent manner.
SIMILARITY: Contains 1 C2 tensin-type domain.
SIMILARITY: Contains 1 phosphatase tensin-type domain.
SIMILARITY: Contains 1 SH2 domain.

-  Primer design for this transcript
 

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-  MalaCards Disease Associations
  MalaCards Gene Search: TNS3
Diseases sorted by gene-association score: anisakiasis (9), primary syphilis (6)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 33.73 RPKM in Nerve - Tibial
Total median expression: 586.20 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -93.50325-0.288 Picture PostScript Text
3' UTR -1021.202922-0.349 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR008973 - C2_Ca/lipid-bd_dom_CaLB
IPR011993 - PH_like_dom
IPR014019 - Phosphatase_tensin-typ
IPR013625 - PTB
IPR006020 - PTyr_interaction_dom
IPR000980 - SH2
IPR014020 - Tensin_phosphatase_C2-dom

Pfam Domains:
PF00017 - SH2 domain
PF08416 - Phosphotyrosine-binding domain
PF10409 - C2 domain of PTEN tumour-suppressor protein

SCOP Domains:
50729 - PH domain-like
49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
52799 - (Phosphotyrosine protein) phosphatases II
55550 - SH2 domain

ModBase Predicted Comparative 3D Structure on Q68CZ2
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0008284 positive regulation of cell proliferation
GO:0016477 cell migration
GO:0048286 lung alveolus development

Cellular Component:
GO:0005829 cytosol
GO:0005925 focal adhesion
GO:0030054 cell junction


-  Descriptions from all associated GenBank mRNAs
  AK023794 - Homo sapiens cDNA FLJ13732 fis, clone PLACE3000145, moderately similar to TENSIN.
BX649002 - Homo sapiens mRNA; cDNA DKFZp686G2290 (from clone DKFZp686G2290).
BX648770 - Homo sapiens mRNA; cDNA DKFZp686K12123 (from clone DKFZp686K12123).
AB062750 - Homo sapiens mRNA for thyroid specific PTB domain protein, complete cds.
AL833845 - Homo sapiens mRNA; cDNA DKFZp434I2435 (from clone DKFZp434I2435).
AF378756 - Homo sapiens tumor endothelial marker 6 (TEM6) mRNA, complete cds.
CR749644 - Homo sapiens mRNA; cDNA DKFZp686M1045 (from clone DKFZp686M1045).
AK001539 - Homo sapiens cDNA FLJ10677 fis, clone NT2RP2006467.
AK092864 - Homo sapiens cDNA FLJ35545 fis, clone SPLEN2003918, moderately similar to TENSIN.
AX747776 - Sequence 1301 from Patent EP1308459.
AB208995 - Homo sapiens mRNA for Tensin 3 variant protein.
AK310472 - Homo sapiens cDNA, FLJ17514.
BC137133 - Homo sapiens tensin 3, mRNA (cDNA clone MGC:168753 IMAGE:9021130), complete cds.
BC137134 - Homo sapiens tensin 3, mRNA (cDNA clone MGC:168754 IMAGE:9021131), complete cds.
AF417489 - Homo sapiens tensin 3 mRNA, complete cds.
AB463308 - Synthetic construct DNA, clone: pF1KB9568, Homo sapiens TNS3 gene for tensin 3, without stop codon, in Flexi system.
BC071791 - Homo sapiens tensin 3, mRNA (cDNA clone IMAGE:4611842), complete cds.
CU687172 - Synthetic construct Homo sapiens gateway clone IMAGE:100023144 5' read TNS3 mRNA.
AK002151 - Homo sapiens cDNA FLJ11289 fis, clone PLACE1009621.
JD042553 - Sequence 23577 from Patent EP1572962.
JD295386 - Sequence 276410 from Patent EP1572962.
JD038806 - Sequence 19830 from Patent EP1572962.
JD210833 - Sequence 191857 from Patent EP1572962.
JD375014 - Sequence 356038 from Patent EP1572962.
JD067035 - Sequence 48059 from Patent EP1572962.
JD253808 - Sequence 234832 from Patent EP1572962.
JD187842 - Sequence 168866 from Patent EP1572962.
JD381583 - Sequence 362607 from Patent EP1572962.
JD566576 - Sequence 547600 from Patent EP1572962.
JD272791 - Sequence 253815 from Patent EP1572962.
JD231259 - Sequence 212283 from Patent EP1572962.
JD409659 - Sequence 390683 from Patent EP1572962.
JD559066 - Sequence 540090 from Patent EP1572962.
JD236623 - Sequence 217647 from Patent EP1572962.
JD305688 - Sequence 286712 from Patent EP1572962.
JD449323 - Sequence 430347 from Patent EP1572962.
JD496504 - Sequence 477528 from Patent EP1572962.
JD511164 - Sequence 492188 from Patent EP1572962.
JD404357 - Sequence 385381 from Patent EP1572962.
JD189222 - Sequence 170246 from Patent EP1572962.
JD085954 - Sequence 66978 from Patent EP1572962.
JD052355 - Sequence 33379 from Patent EP1572962.
JD251160 - Sequence 232184 from Patent EP1572962.
JD114106 - Sequence 95130 from Patent EP1572962.
JD160307 - Sequence 141331 from Patent EP1572962.
JD205003 - Sequence 186027 from Patent EP1572962.
JD444595 - Sequence 425619 from Patent EP1572962.
JD112188 - Sequence 93212 from Patent EP1572962.
JD441534 - Sequence 422558 from Patent EP1572962.
JD293912 - Sequence 274936 from Patent EP1572962.
JD281767 - Sequence 262791 from Patent EP1572962.
JD490221 - Sequence 471245 from Patent EP1572962.
JD193090 - Sequence 174114 from Patent EP1572962.
JD069127 - Sequence 50151 from Patent EP1572962.
JD104818 - Sequence 85842 from Patent EP1572962.
JD383653 - Sequence 364677 from Patent EP1572962.
JD434285 - Sequence 415309 from Patent EP1572962.
JD167858 - Sequence 148882 from Patent EP1572962.
JD042722 - Sequence 23746 from Patent EP1572962.
JD544726 - Sequence 525750 from Patent EP1572962.
JD218771 - Sequence 199795 from Patent EP1572962.
JD457799 - Sequence 438823 from Patent EP1572962.
JD242485 - Sequence 223509 from Patent EP1572962.
JD436913 - Sequence 417937 from Patent EP1572962.
JD192768 - Sequence 173792 from Patent EP1572962.
JD268473 - Sequence 249497 from Patent EP1572962.
KP189194 - Homo sapiens MAP3K3-TNS3 fusion protein mRNA, partial cds.
KP189193 - Homo sapiens TNS3-MAP3K3 fusion protein mRNA, partial cds.
JD351498 - Sequence 332522 from Patent EP1572962.
AX721225 - Sequence 185 from Patent WO0220754.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q68CZ2 (Reactome details) participates in the following event(s):

R-HSA-8875523 MET binds TNS3
R-HSA-8875513 MET interacts with TNS proteins
R-HSA-8875878 MET promotes cell motility
R-HSA-6806834 Signaling by MET
R-HSA-9006934 Signaling by Receptor Tyrosine Kinases
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: B2RNV1, ENST00000311160.1, ENST00000311160.10, ENST00000311160.11, ENST00000311160.12, ENST00000311160.13, ENST00000311160.2, ENST00000311160.3, ENST00000311160.4, ENST00000311160.5, ENST00000311160.6, ENST00000311160.7, ENST00000311160.8, ENST00000311160.9, NM_022748, Q68CZ2, Q6IPQ2, Q8IZW7, Q8NAD0, Q96PE0, Q96S48, TEM6, TENS1, TENS3_HUMAN, TPP, uc317oxx.1, uc317oxx.2
UCSC ID: ENST00000311160.14_8
RefSeq Accession: NM_022748.12
Protein: Q68CZ2 (aka TENS3_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.