Human Gene TOMM22 (ENST00000216034.6_4) from GENCODE V47lift37
  Description: translocase of outer mitochondrial membrane 22 (from RefSeq NM_020243.5)
Gencode Transcript: ENST00000216034.6_4
Gencode Gene: ENSG00000100216.6_7
Transcript (Including UTRs)
   Position: hg19 chr22:39,077,962-39,081,426 Size: 3,465 Total Exon Count: 4 Strand: +
Coding Region
   Position: hg19 chr22:39,077,984-39,079,846 Size: 1,863 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr22:39,077,962-39,081,426)mRNA (may differ from genome)Protein (142 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: TOM22_HUMAN
DESCRIPTION: RecName: Full=Mitochondrial import receptor subunit TOM22 homolog; Short=hTom22; AltName: Full=1C9-2; AltName: Full=Translocase of outer membrane 22 kDa subunit homolog;
FUNCTION: Central receptor component of the translocase of the outer membrane of mitochondria (TOM complex) responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with the peripheral receptor TOM20 functions as the transit peptide receptor and facilitates the movement of preproteins into the translocation pore.
SUBUNIT: Forms part of the preprotein translocase complex of the outer mitochondrial membrane (TOM complex) which consists of at least 7 different proteins (TOMM5, TOMM6, TOMM7, TOMM20, TOMM22, TOMM40 and TOMM70). Interacts with TOMM40. Interacts with PPP2R2B (By similarity).
INTERACTION: Q9P0U1:TOMM7; NbExp=2; IntAct=EBI-1047508, EBI-1180558;
SUBCELLULAR LOCATION: Mitochondrion outer membrane; Single-pass membrane protein (By similarity).
TISSUE SPECIFICITY: Ubiquitous.
DOMAIN: Requires the transmembrane domain (TMD), a short segment (the import sequence) in the cytoplasmic domain localizing separately from the TMD and the C-tail signal in the C-terminal domain for efficient targeting and integration into the TOM complex (By similarity). The N-terminal domain (residues 1-62) is important for binding to the unfolded mature imported proteins. Residues (49-71) of the cytoplasmic domain interacts with TOMM20 while the C-terminal segment (residues 63-82) binds presequence of preproteins.
SIMILARITY: Belongs to the Tom22 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: TOMM22
Diseases sorted by gene-association score: spinocerebellar ataxia 12 (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 52.79 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 1180.86 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -0.1022-0.005 Picture PostScript Text
3' UTR -463.901580-0.294 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR005683 - Tom22

Pfam Domains:
PF04281 - Mitochondrial import receptor subunit Tom22

SCOP Domains:
103481 - Multidrug resistance efflux transporter EmrE

ModBase Predicted Comparative 3D Structure on Q9NS69
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0008320 protein transmembrane transporter activity

Biological Process:
GO:0006626 protein targeting to mitochondrion
GO:0006886 intracellular protein transport
GO:0015031 protein transport
GO:0030150 protein import into mitochondrial matrix
GO:0043065 positive regulation of apoptotic process
GO:0045040 protein import into mitochondrial outer membrane
GO:0051204 protein insertion into mitochondrial membrane

Cellular Component:
GO:0005739 mitochondrion
GO:0005741 mitochondrial outer membrane
GO:0005742 mitochondrial outer membrane translocase complex
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0031307 integral component of mitochondrial outer membrane


-  Descriptions from all associated GenBank mRNAs
  AK223021 - Homo sapiens mRNA for mitochondrial import receptor Tom22 variant, clone: HSI14093.
AK024731 - Homo sapiens cDNA: FLJ21078 fis, clone CAS02162.
AB041906 - Homo sapiens mRNA for Tom22, complete cds.
AF163256 - Homo sapiens MSTP065 (MST065) mRNA, complete cds.
AB040119 - Homo sapiens mRNA for mitochondrial import receptor Tom22, complete cds.
CR456475 - Homo sapiens dJ508I15.5 full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.dJ508I15.5).
BC009363 - Homo sapiens translocase of outer mitochondrial membrane 22 homolog (yeast), mRNA (cDNA clone MGC:14851 IMAGE:4302531), complete cds.
KJ894373 - Synthetic construct Homo sapiens clone ccsbBroadEn_03767 TOMM22 gene, encodes complete protein.
AK312076 - Homo sapiens cDNA, FLJ92357, Homo sapiens translocase of outer mitochondrial membrane 22 homolog(yeast) (TOMM22), mRNA.
CU013313 - Homo sapiens TOMM22, mRNA (cDNA clone IMAGE:100000091), complete cds, without stop codon, in Gateway system.
DQ896289 - Synthetic construct Homo sapiens clone IMAGE:100010749; FLH192966.01L; RZPDo839B0468D translocase of outer mitochondrial membrane 22 homolog (yeast) (TOMM22) gene, encodes complete protein; nuclear gene for mitochondrial product.
CU013025 - Homo sapiens TOMM22, mRNA (cDNA clone IMAGE:100000187), complete cds, with stop codon, in Gateway system.
DQ893045 - Synthetic construct clone IMAGE:100005675; FLH192970.01X; RZPDo839B0478D translocase of outer mitochondrial membrane 22 homolog (yeast) (TOMM22) gene, encodes complete protein; nuclear gene for mitochondrial product.
JD291509 - Sequence 272533 from Patent EP1572962.
JD250047 - Sequence 231071 from Patent EP1572962.
JD043329 - Sequence 24353 from Patent EP1572962.
JD292268 - Sequence 273292 from Patent EP1572962.
JD510410 - Sequence 491434 from Patent EP1572962.
JD436517 - Sequence 417541 from Patent EP1572962.
JD217666 - Sequence 198690 from Patent EP1572962.
JD462845 - Sequence 443869 from Patent EP1572962.
JD360276 - Sequence 341300 from Patent EP1572962.
JD226245 - Sequence 207269 from Patent EP1572962.
JD266338 - Sequence 247362 from Patent EP1572962.
JD065642 - Sequence 46666 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9NS69 (Reactome details) participates in the following event(s):

R-HSA-1268022 TOMM40 complex translocates proteins from the cytosol to the mitochondrial intermembrane space
R-HSA-5205661 Pink1 is recruited from the cytoplasm to the mitochondria
R-HSA-1268020 Mitochondrial protein import
R-HSA-5205685 Pink/Parkin Mediated Mitophagy
R-HSA-392499 Metabolism of proteins
R-HSA-5205647 Mitophagy

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000216034.1, ENST00000216034.2, ENST00000216034.3, ENST00000216034.4, ENST00000216034.5, NM_020243, Q9NS69, TOM22, TOM22_HUMAN, uc317cnu.1, uc317cnu.2
UCSC ID: ENST00000216034.6_4
RefSeq Accession: NM_020243.5
Protein: Q9NS69 (aka TOM22_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.