Human Gene TRIB2 (ENST00000155926.9_3) from GENCODE V47lift37
  Description: tribbles pseudokinase 2, transcript variant 1 (from RefSeq NM_021643.4)
Gencode Transcript: ENST00000155926.9_3
Gencode Gene: ENSG00000071575.12_6
Transcript (Including UTRs)
   Position: hg19 chr2:12,857,062-12,882,860 Size: 25,799 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg19 chr2:12,858,434-12,880,920 Size: 22,487 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:12,857,062-12,882,860)mRNA (may differ from genome)Protein (343 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCHuman Cortex Gene ExpressionMalacardsMGIOMIMPubMed
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: TRIB2_HUMAN
DESCRIPTION: RecName: Full=Tribbles homolog 2; Short=TRB-2;
FUNCTION: Interacts with MAPK kinases and regulates activation of MAP kinases. Does not display kinase activity (By similarity).
SUBCELLULAR LOCATION: Cytoplasm (By similarity). Cytoplasm, cytoskeleton (By similarity). Note=May associate with the cytoskeleton (By similarity).
TISSUE SPECIFICITY: Highly expressed in peripheral blood leukocytes.
MISCELLANEOUS: Antibodies against TRIB2 are present in sera from patients with autoimmune uveitis.
SIMILARITY: Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. Tribbles subfamily.
SIMILARITY: Contains 1 protein kinase domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: TRIB2
Diseases sorted by gene-association score: uveitis (4), narcolepsy (3)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 56.50 RPKM in Ovary
Total median expression: 744.48 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -546.041372-0.398 Picture PostScript Text
3' UTR -534.001940-0.275 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR024104 - Tribbles/Ser_Thr_kinase_40

Pfam Domains:
PF00069 - Protein kinase domain
PF07714 - Protein tyrosine and serine/threonine kinase

SCOP Domains:
56112 - Protein kinase-like (PK-like)

ModBase Predicted Comparative 3D Structure on Q92519
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
Gene SorterGene Sorter Gene Sorter  
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004860 protein kinase inhibitor activity
GO:0008134 transcription factor binding
GO:0031434 mitogen-activated protein kinase kinase binding
GO:0031625 ubiquitin protein ligase binding
GO:0055106 ubiquitin-protein transferase regulator activity
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity

Biological Process:
GO:0006469 negative regulation of protein kinase activity
GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0043405 regulation of MAP kinase activity
GO:0045081 negative regulation of interleukin-10 biosynthetic process
GO:0045599 negative regulation of fat cell differentiation
GO:0006468 protein phosphorylation

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005856 cytoskeleton


-  Descriptions from all associated GenBank mRNAs
  LF212481 - JP 2014500723-A/19984: Polycomb-Associated Non-Coding RNAs.
AY245544 - Homo sapiens TRB2 protein mRNA, complete cds.
AK299146 - Homo sapiens cDNA FLJ57420 complete cds, highly similar to Tribbles homolog 2.
LF209495 - JP 2014500723-A/16998: Polycomb-Associated Non-Coding RNAs.
LF213784 - JP 2014500723-A/21287: Polycomb-Associated Non-Coding RNAs.
D87119 - Homo sapiens mRNA for GS3955, complete cds.
JD491757 - Sequence 472781 from Patent EP1572962.
JD096666 - Sequence 77690 from Patent EP1572962.
JD096653 - Sequence 77677 from Patent EP1572962.
JD315689 - Sequence 296713 from Patent EP1572962.
JD244640 - Sequence 225664 from Patent EP1572962.
JD409867 - Sequence 390891 from Patent EP1572962.
JD172712 - Sequence 153736 from Patent EP1572962.
JD527671 - Sequence 508695 from Patent EP1572962.
JD443988 - Sequence 425012 from Patent EP1572962.
JD162526 - Sequence 143550 from Patent EP1572962.
JD282083 - Sequence 263107 from Patent EP1572962.
LF328923 - JP 2014500723-A/136426: Polycomb-Associated Non-Coding RNAs.
LF328922 - JP 2014500723-A/136425: Polycomb-Associated Non-Coding RNAs.
JD201949 - Sequence 182973 from Patent EP1572962.
AK313237 - Homo sapiens cDNA, FLJ93741, Homo sapiens tribbles homolog 2 (TRB2), mRNA.
BC002637 - Homo sapiens tribbles homolog 2 (Drosophila), mRNA (cDNA clone MGC:3860 IMAGE:3607549), complete cds.
JD330212 - Sequence 311236 from Patent EP1572962.
JD477522 - Sequence 458546 from Patent EP1572962.
JD399916 - Sequence 380940 from Patent EP1572962.
JD335921 - Sequence 316945 from Patent EP1572962.
JD133452 - Sequence 114476 from Patent EP1572962.
JD161288 - Sequence 142312 from Patent EP1572962.
LF328921 - JP 2014500723-A/136424: Polycomb-Associated Non-Coding RNAs.
JD076276 - Sequence 57300 from Patent EP1572962.
JD139937 - Sequence 120961 from Patent EP1572962.
JD566165 - Sequence 547189 from Patent EP1572962.
KJ893647 - Synthetic construct Homo sapiens clone ccsbBroadEn_03041 TRIB2 gene, encodes complete protein.
KJ905459 - Synthetic construct Homo sapiens clone ccsbBroadEn_15048 TRIB2 gene, encodes complete protein.
CU678082 - Synthetic construct Homo sapiens gateway clone IMAGE:100019026 5' read TRIB2 mRNA.
AB529001 - Synthetic construct DNA, clone: pF1KE0944, Homo sapiens TRIB2 gene for tribbles homolog 2, without stop codon, in Flexi system.
LF328920 - JP 2014500723-A/136423: Polycomb-Associated Non-Coding RNAs.
LF328918 - JP 2014500723-A/136421: Polycomb-Associated Non-Coding RNAs.
LF328914 - JP 2014500723-A/136417: Polycomb-Associated Non-Coding RNAs.
AK129973 - Homo sapiens cDNA FLJ26463 fis, clone KDN03917.
JD214870 - Sequence 195894 from Patent EP1572962.
LF328913 - JP 2014500723-A/136416: Polycomb-Associated Non-Coding RNAs.
JD100982 - Sequence 82006 from Patent EP1572962.
JD482498 - Sequence 463522 from Patent EP1572962.
JD548567 - Sequence 529591 from Patent EP1572962.
JD071122 - Sequence 52146 from Patent EP1572962.
LF328912 - JP 2014500723-A/136415: Polycomb-Associated Non-Coding RNAs.
JD163851 - Sequence 144875 from Patent EP1572962.
JD102883 - Sequence 83907 from Patent EP1572962.
JD188376 - Sequence 169400 from Patent EP1572962.
JD326790 - Sequence 307814 from Patent EP1572962.
JD264038 - Sequence 245062 from Patent EP1572962.
JD153754 - Sequence 134778 from Patent EP1572962.
JD344858 - Sequence 325882 from Patent EP1572962.
JD551779 - Sequence 532803 from Patent EP1572962.
JD206196 - Sequence 187220 from Patent EP1572962.
JD434223 - Sequence 415247 from Patent EP1572962.
JD044560 - Sequence 25584 from Patent EP1572962.
JD265573 - Sequence 246597 from Patent EP1572962.
JD403605 - Sequence 384629 from Patent EP1572962.
JD422927 - Sequence 403951 from Patent EP1572962.
LF328911 - JP 2014500723-A/136414: Polycomb-Associated Non-Coding RNAs.
JD142774 - Sequence 123798 from Patent EP1572962.
JD118189 - Sequence 99213 from Patent EP1572962.
JD204636 - Sequence 185660 from Patent EP1572962.
JD046294 - Sequence 27318 from Patent EP1572962.
JD323588 - Sequence 304612 from Patent EP1572962.
MA564500 - JP 2018138019-A/136426: Polycomb-Associated Non-Coding RNAs.
MA564499 - JP 2018138019-A/136425: Polycomb-Associated Non-Coding RNAs.
MA564498 - JP 2018138019-A/136424: Polycomb-Associated Non-Coding RNAs.
MA564497 - JP 2018138019-A/136423: Polycomb-Associated Non-Coding RNAs.
MA564495 - JP 2018138019-A/136421: Polycomb-Associated Non-Coding RNAs.
MA564491 - JP 2018138019-A/136417: Polycomb-Associated Non-Coding RNAs.
MA564490 - JP 2018138019-A/136416: Polycomb-Associated Non-Coding RNAs.
MA564489 - JP 2018138019-A/136415: Polycomb-Associated Non-Coding RNAs.
MA564488 - JP 2018138019-A/136414: Polycomb-Associated Non-Coding RNAs.
MA448058 - JP 2018138019-A/19984: Polycomb-Associated Non-Coding RNAs.
MA445072 - JP 2018138019-A/16998: Polycomb-Associated Non-Coding RNAs.
MA449361 - JP 2018138019-A/21287: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: B2R851, D6W510, ENST00000155926.1, ENST00000155926.2, ENST00000155926.3, ENST00000155926.4, ENST00000155926.5, ENST00000155926.6, ENST00000155926.7, ENST00000155926.8, NM_021643, Q92519, TRB2 , TRIB2 , TRIB2_HUMAN, uc317cbn.1, uc317cbn.2
UCSC ID: ENST00000155926.9_3
RefSeq Accession: NM_021643.4
Protein: Q92519 (aka TRIB2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.