Human Gene TSC22D3 (ENST00000372383.9_11) from GENCODE V47lift37
  Description: TSC22 domain family member 3, transcript variant 1 (from RefSeq NM_198057.3)
Gencode Transcript: ENST00000372383.9_11
Gencode Gene: ENSG00000157514.18_18
Transcript (Including UTRs)
   Position: hg19 chrX:106,956,451-107,019,017 Size: 62,567 Total Exon Count: 3 Strand: -
Coding Region
   Position: hg19 chrX:106,957,749-107,018,649 Size: 60,901 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:106,956,451-107,019,017)mRNA (may differ from genome)Protein (200 aa)
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-  Comments and Description Text from UniProtKB
  ID: T22D3_HUMAN
DESCRIPTION: RecName: Full=TSC22 domain family protein 3; AltName: Full=DSIP-immunoreactive peptide; Short=Protein DIP; Short=hDIP; AltName: Full=Delta sleep-inducing peptide immunoreactor; AltName: Full=Glucocorticoid-induced leucine zipper protein; Short=GILZ; AltName: Full=TSC-22-like protein; AltName: Full=TSC-22-related protein; Short=TSC-22R;
FUNCTION: Protects T-cells from IL2 deprivation-induced apoptosis through the inhibition of FOXO3A transcriptional activity that leads to the down-regulation of the pro-apoptotic factor BCL2L11. In macrophages, plays a role in the anti-inflammatory and immunosuppressive effects of glucocorticoids and IL10. In T-cells, inhibits anti-CD3-induced NFKB1 nuclear translocation. In vitro, suppresses AP1 and NFKB1 DNA-binding activities (By similarity).
SUBUNIT: Can form homodimers, however it is likely to function as a monomer. Interacts with AP1 (By similarity). Interacts with NFKB1.
TISSUE SPECIFICITY: Expressed in brain, lung, spleen and skeletal muscle. Lower levels detected in heart and kidney. Not detected in the pancreas. In non-lymphoid tissues, in the absence of inflammation, the major source of constitutive expression is the macrophage lineage. Also expressed in cells from different hemopoietic cell lineages, including bone marrow cells, CD34+ stem cells, mature B- and T-cells, monocytes and granulocytes. Down- regulated in activated macrophages from inflammatory lesions of delayed-type hypersensitivity (DTH) reactions, such as in tuberculosis and in Crohn disease, whereas in Burkitt lymphoma, persists in macrophages involved in the phagocytosis of apoptotic malignant cells.
INDUCTION: By glucocorticoids in lymphoid cells and upon IL4, IL10, IL13 or glucocorticoid treatment in monocyte/macrophage cells. Transiently induced by IL2 deprivation in T-cells.
DOMAIN: The leucine-zipper is involved in homodimerization (By similarity).
SIMILARITY: Belongs to the TSC-22/Dip/Bun family.
SEQUENCE CAUTION: Sequence=AAH18148.3; Type=Erroneous initiation; Sequence=CAA90644.1; Type=Erroneous initiation; Sequence=CAB53669.1; Type=Frameshift; Positions=4;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 333.04 RPKM in Nerve - Tibial
Total median expression: 4314.22 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -155.00368-0.421 Picture PostScript Text
3' UTR -414.201298-0.319 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000580 - TSC-22_Dip_Bun

Pfam Domains:
PF01166 - TSC-22/dip/bun family

SCOP Domains:
58026 - Delta-sleep-inducing peptide immunoreactive peptide
75704 - Mitotic arrest deficient-like 1, Mad1

ModBase Predicted Comparative 3D Structure on Q99576
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0005515 protein binding
GO:0043426 MRF binding

Biological Process:
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0006355 regulation of transcription, DNA-templated
GO:0006970 response to osmotic stress
GO:0034220 ion transmembrane transport
GO:0048642 negative regulation of skeletal muscle tissue development
GO:0070236 negative regulation of activation-induced cell death of T cells

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  AB025432 - Homo sapiens mRNA for GILZ, complete cds.
BC018148 - Homo sapiens TSC22 domain family, member 3, mRNA (cDNA clone IMAGE:3851403), complete cds.
AY007119 - Homo sapiens clone CDABP0007 mRNA sequence.
BC072446 - Homo sapiens TSC22 domain family, member 3, mRNA (cDNA clone MGC:90321 IMAGE:6165765), complete cds.
AL110191 - Homo sapiens mRNA; cDNA DKFZp566A093 (from clone DKFZp566A093); complete cds.
CR933650 - Homo sapiens mRNA; cDNA DKFZp313A1123 (from clone DKFZp313A1123).
BX647854 - Homo sapiens mRNA; cDNA DKFZp313I1016 (from clone DKFZp313I1016).
AK127938 - Homo sapiens cDNA FLJ46047 fis, clone SYNOV2003326, highly similar to TSC22 domain family protein 3 (Glucocorticoid-induced leucine zipper protein).
AF153603 - Homo sapiens TSC-22 related protein (TSC-22R) mRNA, complete cds.
AK092669 - Homo sapiens cDNA FLJ35350 fis, clone PUAEN1000065, highly similar to Homo sapiens TSC22 domain family, member 3 (TSC22D3), transcript variant 1, mRNA.
AX747661 - Sequence 1186 from Patent EP1308459.
AK092645 - Homo sapiens cDNA FLJ35326 fis, clone PROST2012745, moderately similar to Homo sapiens TSC-22 related protein (TSC-22R) mRNA.
AX747650 - Sequence 1175 from Patent EP1308459.
AF228339 - Homo sapiens glucocorticoid-induced GILZ mRNA, complete cds.
AF183393 - Homo sapiens TSC-22-like Protein mRNA, complete cds.
L32074 - Homo sapiens (clone XP587B) mRNA, partial EST.
AK300535 - Homo sapiens cDNA FLJ52937 complete cds, highly similar to Homo sapiens TSC22 domain family, member 3 (TSC22D3), transcript variant 1, mRNA.
CR533450 - Homo sapiens full open reading frame cDNA clone RZPDo834G1216D for gene DSIPI, delta sleep inducing peptide, immunoreactor; complete cds, incl. stopcodon.
Z50781 - H.sapiens mRNA for leucine zipper protein.
JD547384 - Sequence 528408 from Patent EP1572962.
JD523602 - Sequence 504626 from Patent EP1572962.
JD261146 - Sequence 242170 from Patent EP1572962.
AK311834 - Homo sapiens cDNA, FLJ92096, highly similar to Homo sapiens delta sleep inducing peptide, immunoreactor (DSIPI), mRNA.
EU831656 - Synthetic construct Homo sapiens clone HAIB:100066685; DKFZo007G0719 TSC22 domain family, member 3 protein (TSC22D3) gene, encodes complete protein.
EU831739 - Synthetic construct Homo sapiens clone HAIB:100066768; DKFZo003G0720 TSC22 domain family, member 3 protein (TSC22D3) gene, encodes complete protein.
AB527487 - Synthetic construct DNA, clone: pF1KB7928, Homo sapiens TSC22D3 gene for TSC22 domain family, member 3, without stop codon, in Flexi system.
KJ896732 - Synthetic construct Homo sapiens clone ccsbBroadEn_06126 TSC22D3 gene, encodes complete protein.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q99576 (Reactome details) participates in the following event(s):

R-HSA-2682349 RAF1:SGK:TSC22D3:WPP ubiquitinates SCNN channels
R-HSA-2672351 Stimuli-sensing channels
R-HSA-983712 Ion channel transport
R-HSA-382551 Transport of small molecules

-  Other Names for This Gene
  Alternate Gene Symbols: DSIPI , ENST00000372383.1, ENST00000372383.2, ENST00000372383.3, ENST00000372383.4, ENST00000372383.5, ENST00000372383.6, ENST00000372383.7, ENST00000372383.8, GILZ , NM_198057, Q5H9S3, Q5JRI9, Q5JRJ2, Q6FIH6, Q8NAI1, Q8WVB9, Q99576, Q9UBN5, Q9UG13, T22D3_HUMAN, TSC22D3 , uc318jwf.1, uc318jwf.2
UCSC ID: ENST00000372383.9_11
RefSeq Accession: NM_198057.3
Protein: Q99576 (aka T22D3_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.