Human Gene TUBG1 (ENST00000251413.8_4) from GENCODE V47lift37
  Description: tubulin gamma 1 (from RefSeq NM_001070.5)
Gencode Transcript: ENST00000251413.8_4
Gencode Gene: ENSG00000131462.9_8
Transcript (Including UTRs)
   Position: hg19 chr17:40,761,701-40,767,256 Size: 5,556 Total Exon Count: 11 Strand: +
Coding Region
   Position: hg19 chr17:40,761,756-40,767,059 Size: 5,304 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:40,761,701-40,767,256)mRNA (may differ from genome)Protein (451 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: TBG1_HUMAN
DESCRIPTION: RecName: Full=Tubulin gamma-1 chain; AltName: Full=Gamma-1-tubulin; AltName: Full=Gamma-tubulin complex component 1; Short=GCP-1;
FUNCTION: Tubulin is the major constituent of microtubules. Gamma tubulin is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome. Pericentriolar matrix component that regulates alpha/beta tubulin minus-end nucleation, centrosome duplication and spindle formation.
SUBUNIT: Interacts with TUBGCP2 and TUBGCP3. Interacts with B9D2 (By similarity). Interacts with CDK5RAP2; the interaction is leading to centrosomal localization of TUBG1 and CDK5RAP2. Interacts with PIFO.
INTERACTION: Q96L34:MARK4; NbExp=4; IntAct=EBI-302589, EBI-302319; Q08AG7:MZT1; NbExp=2; IntAct=EBI-302589, EBI-2637198; Q6NZ67:MZT2B; NbExp=2; IntAct=EBI-302589, EBI-1052566;
SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton, centrosome.
PTM: Phosphorylation at Ser-131 by BRSK1 regulates centrosome duplication, possibly by mediating relocation of gamma-tubulin and its associated proteins from the cytoplasm to the centrosome (By similarity).
MASS SPECTROMETRY: Mass=51197.98; Method=MALDI; Range=1-451; Source=PubMed:11840567;
SIMILARITY: Belongs to the tubulin family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: TUBG1
Diseases sorted by gene-association score: cortical dysplasia, complex, with other brain malformations 4* (1331), pachygyria (9), subcortical band heterotopia (9), band heterotopia (8), reducing body myopathy (7), microcephaly (2), retinitis pigmentosa (0)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D013749 Tetrachlorodibenzodioxin
  • C006780 bisphenol A
  • C029497 2,3-bis(3'-hydroxybenzyl)butyrolactone
  • C016403 2,4-dinitrotoluene
  • C023514 2,6-dinitrotoluene
  • C532162 2-(1H-indazol-4-yl)-6-(4-methanesulfonylpiperazin-1-ylmethyl)-4-morpholin-4-ylthieno(3,2-d)pyrimidine
  • D000082 Acetaminophen
  • D000643 Ammonium Chloride
  • D002330 Carmustine
  • D002994 Clofibrate
          more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 213.68 RPKM in Testis
Total median expression: 1072.21 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -26.8055-0.487 Picture PostScript Text
3' UTR -39.20197-0.199 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002454 - Gamma_tubulin
IPR008280 - Tub_FtsZ_C
IPR000217 - Tubulin
IPR018316 - Tubulin/FtsZ_2-layer-sand-dom
IPR023123 - Tubulin_C
IPR017975 - Tubulin_CS
IPR003008 - Tubulin_FtsZ_GTPase

Pfam Domains:
PF00091 - Tubulin/FtsZ family, GTPase domain
PF03953 - Tubulin C-terminal domain

SCOP Domains:
52490 - Tubulin nucleotide-binding domain-like
55307 - Tubulin C-terminal domain-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1Z5V - X-ray MuPIT 1Z5W - X-ray MuPIT 3CB2 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P23258
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0003924 GTPase activity
GO:0005200 structural constituent of cytoskeleton
GO:0005515 protein binding
GO:0005525 GTP binding
GO:0042802 identical protein binding

Biological Process:
GO:0000086 G2/M transition of mitotic cell cycle
GO:0000212 meiotic spindle organization
GO:0000226 microtubule cytoskeleton organization
GO:0007017 microtubule-based process
GO:0007020 microtubule nucleation
GO:0010389 regulation of G2/M transition of mitotic cell cycle
GO:0031122 cytoplasmic microtubule organization
GO:0071277 cellular response to calcium ion
GO:0097711 ciliary basal body docking

Cellular Component:
GO:0000242 pericentriolar material
GO:0000794 condensed nuclear chromosome
GO:0000930 gamma-tubulin complex
GO:0005737 cytoplasm
GO:0005813 centrosome
GO:0005814 centriole
GO:0005815 microtubule organizing center
GO:0005827 polar microtubule
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005874 microtubule
GO:0005876 spindle microtubule
GO:0005881 cytoplasmic microtubule
GO:0005929 cilium
GO:0031252 cell leading edge
GO:0036064 ciliary basal body
GO:0045177 apical part of cell
GO:0055037 recycling endosome
GO:0097730 non-motile cilium


-  Descriptions from all associated GenBank mRNAs
  LF384804 - JP 2014500723-A/192307: Polycomb-Associated Non-Coding RNAs.
AK313339 - Homo sapiens cDNA, FLJ93861, highly similar to Homo sapiens tubulin, gamma 1 (TUBG1), mRNA.
BC000619 - Homo sapiens tubulin, gamma 1, mRNA (cDNA clone MGC:1593 IMAGE:3345973), complete cds.
M61764 - Human gamma-tubulin mRNA, complete cds.
KJ892331 - Synthetic construct Homo sapiens clone ccsbBroadEn_01725 TUBG1 gene, encodes complete protein.
CR407642 - Homo sapiens full open reading frame cDNA clone RZPDo834F112D for gene TUBG1, tubulin, gamma 1 complete cds, without stopcodon.
BT019931 - Homo sapiens tubulin, gamma 1 mRNA, complete cds.
DQ891925 - Synthetic construct clone IMAGE:100004555; FLH181467.01X; RZPDo839D09136D tubulin, gamma 1 (TUBG1) gene, encodes complete protein.
DQ895110 - Synthetic construct Homo sapiens clone IMAGE:100009570; FLH181463.01L; RZPDo839D09135D tubulin, gamma 1 (TUBG1) gene, encodes complete protein.
MA620381 - JP 2018138019-A/192307: Polycomb-Associated Non-Coding RNAs.
JD470811 - Sequence 451835 from Patent EP1572962.
JD443999 - Sequence 425023 from Patent EP1572962.
AK311637 - Homo sapiens cDNA, FLJ18679.
L77579 - Homo sapiens (clone SEL37b) 17q YAC (26F3) RNA.
LF327891 - JP 2014500723-A/135394: Polycomb-Associated Non-Coding RNAs.
LF327892 - JP 2014500723-A/135395: Polycomb-Associated Non-Coding RNAs.
LF327893 - JP 2014500723-A/135396: Polycomb-Associated Non-Coding RNAs.
LF327894 - JP 2014500723-A/135397: Polycomb-Associated Non-Coding RNAs.
LF327895 - JP 2014500723-A/135398: Polycomb-Associated Non-Coding RNAs.
LF327906 - JP 2014500723-A/135409: Polycomb-Associated Non-Coding RNAs.
LF327896 - JP 2014500723-A/135399: Polycomb-Associated Non-Coding RNAs.
LF327897 - JP 2014500723-A/135400: Polycomb-Associated Non-Coding RNAs.
LF327907 - JP 2014500723-A/135410: Polycomb-Associated Non-Coding RNAs.
JD279707 - Sequence 260731 from Patent EP1572962.
JD560802 - Sequence 541826 from Patent EP1572962.
MA563468 - JP 2018138019-A/135394: Polycomb-Associated Non-Coding RNAs.
MA563469 - JP 2018138019-A/135395: Polycomb-Associated Non-Coding RNAs.
MA563470 - JP 2018138019-A/135396: Polycomb-Associated Non-Coding RNAs.
MA563471 - JP 2018138019-A/135397: Polycomb-Associated Non-Coding RNAs.
MA563472 - JP 2018138019-A/135398: Polycomb-Associated Non-Coding RNAs.
MA563483 - JP 2018138019-A/135409: Polycomb-Associated Non-Coding RNAs.
MA563473 - JP 2018138019-A/135399: Polycomb-Associated Non-Coding RNAs.
MA563474 - JP 2018138019-A/135400: Polycomb-Associated Non-Coding RNAs.
MA563484 - JP 2018138019-A/135410: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P23258 (Reactome details) participates in the following event(s):

R-HSA-380272 Plk1-mediated phosphorylation of Nlp
R-HSA-380283 Recruitment of additional gamma tubulin/ gamma TuRC to the centrosome
R-HSA-380294 Loss of C-Nap-1 from centrosomes
R-HSA-380311 Recruitment of Plk1 to centrosomes
R-HSA-380455 Recruitment of CDK11p58 to the centrosomes
R-HSA-380303 Dissociation of Phospho-Nlp from the centrosome
R-HSA-5626220 C2CD3 binds the mother centriole
R-HSA-380508 Translocation of NuMA to the centrosomes
R-HSA-2574845 AJUBA binds centrosome-associated AURKA
R-HSA-8853405 TPX2 binds AURKA at centrosomes
R-HSA-3000319 BORA binds PLK1 and AURKA
R-HSA-2574840 AJUBA facilitates AURKA autophosphorylation
R-HSA-3000310 AURKA phosphorylates PLK1
R-HSA-5626223 C2CD3 and OFD1 recruit 5 distal appendage proteins to the centriole
R-HSA-5626681 Recruitment of transition zone proteins
R-HSA-5626227 CP110 and CEP97 dissociate from the centriole
R-HSA-380316 Association of NuMA with microtubules
R-HSA-8853419 TPX2 promotes AURKA autophosphorylation
R-HSA-5626228 The distal appendage proteins recruit TTBK2
R-HSA-5638009 CEP164 recruits RAB3IP-carrying Golgi-derived vesicles to the basal body
R-HSA-5626699 MARK4 binds ODF2 in the centriole
R-HSA-5617816 RAB3IP stimulates nucleotide exchange on RAB8A
R-HSA-380259 Loss of Nlp from mitotic centrosomes
R-HSA-380270 Recruitment of mitotic centrosome proteins and complexes
R-HSA-380284 Loss of proteins required for interphase microtubule organization from the centrosome
R-HSA-5620912 Anchoring of the basal body to the plasma membrane
R-HSA-380320 Recruitment of NuMA to mitotic centrosomes
R-HSA-2565942 Regulation of PLK1 Activity at G2/M Transition
R-HSA-8854518 AURKA Activation by TPX2
R-HSA-380287 Centrosome maturation
R-HSA-5617833 Cilium Assembly
R-HSA-68877 Mitotic Prometaphase
R-HSA-69275 G2/M Transition
R-HSA-1852241 Organelle biogenesis and maintenance
R-HSA-68886 M Phase
R-HSA-453274 Mitotic G2-G2/M phases
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-1640170 Cell Cycle

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000251413.1, ENST00000251413.2, ENST00000251413.3, ENST00000251413.4, ENST00000251413.5, ENST00000251413.6, ENST00000251413.7, NM_001070, P23258, Q53X79, Q9BW59, TBG1_HUMAN, TUBG, TUBG1 , uc317feb.1, uc317feb.2
UCSC ID: ENST00000251413.8_4
RefSeq Accession: NM_001070.5
Protein: P23258 (aka TBG1_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene TUBG1:
tubulin-ov (Tubulinopathies Overview)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.