Human Gene TWIST1 (ENST00000242261.6_7) from GENCODE V47lift37
  Description: twist family bHLH transcription factor 1, transcript variant 1 (from RefSeq NM_000474.4)
Gencode Transcript: ENST00000242261.6_7
Gencode Gene: ENSG00000122691.13_12
Transcript (Including UTRs)
   Position: hg19 chr7:19,155,091-19,157,259 Size: 2,169 Total Exon Count: 2 Strand: -
Coding Region
   Position: hg19 chr7:19,156,336-19,156,944 Size: 609 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:19,155,091-19,157,259)mRNA (may differ from genome)Protein (202 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: TWST1_HUMAN
DESCRIPTION: RecName: Full=Twist-related protein 1; AltName: Full=Class A basic helix-loop-helix protein 38; Short=bHLHa38; AltName: Full=H-twist;
FUNCTION: Acts as a transcriptional regulator. Inhibits myogenesis by sequestrating E proteins, inhibiting trans-activation by MEF2, and inhibiting DNA-binding by MYOD1 through physical interaction. This interaction probably involves the basic domains of both proteins. Also represses expression of proinflammatory cytokines such as TNFA and IL1B. Regulates cranial suture patterning and fusion. Activates transcription as a heterodimer with E proteins. Regulates gene expression differentially, depending on dimer composition. Homodimers induce expression of FGFR2 and POSTN while heterodimers repress FGFR2 and POSTN expression and induce THBS1 expression. Heterodimerization is also required for osteoblast differentiation.
SUBUNIT: Efficient DNA binding requires dimerization with another bHLH protein. Homodimer or heterodimer with E proteins such as TCF3. ID1 binds preferentially to TCF3 but does not interact efficiently with TWIST1 so ID1 levels control the amount of TCF3 available to dimerize with TWIST1 and thus determine the type of dimer formed (By similarity).
INTERACTION: P15036:ETS2; NbExp=2; IntAct=EBI-1797287, EBI-1646991; Q92831:KAT2B; NbExp=2; IntAct=EBI-1797287, EBI-477430; P04637:TP53; NbExp=6; IntAct=EBI-1797287, EBI-366083;
SUBCELLULAR LOCATION: Nucleus.
TISSUE SPECIFICITY: Subset of mesodermal cells.
DISEASE: Defects in TWIST1 are a cause of Saethre-Chotzen syndrome (SCS) [MIM:101400]; also known as acrocephalosyndactyly type 3 (ACS3). SCS is a craniosynostosis syndrome characterized by coronal synostosis, brachycephaly, low frontal hairline, facial asymmetry, hypertelorism, broad halluces, and clinodactyly.
DISEASE: Defects in TWIST1 are the cause of Robinow-Sorauf syndrome (RSS) [MIM:180750]; also known as craniosynostosis-bifid hallux syndrome. RSS is an autosomal dominant defect characterized by minor skull and limb anomalies which is very similar to Saethre-Chotzen syndrome.
DISEASE: Defects in TWIST1 are the cause of craniosynostosis type 1 (CRS1) [MIM:123100]. Craniosynostosis consists of premature fusion of one or more cranial sutures, resulting in an abnormal head shape.
SIMILARITY: Contains 1 bHLH (basic helix-loop-helix) domain.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/TWIST1";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: TWIST1
Diseases sorted by gene-association score: saethre-chotzen syndrome* (1385), craniosynostosis 1* (1228), robinow-sorauf syndrome* (1030), craniosynostosis, nonsyndromic* (500), twist1-related craniosynostosis* (500), isolated brachycephaly* (247), isolated plagiocephaly* (247), isolated scaphocephaly* (247), craniosynostosis (39), synostosis (26), baller-gerold syndrome (20), intestinal volvulus (18), muenke syndrome (12), ptosis (12), spermatic cord torsion (11), chest wall lymphoma (11), robinow syndrome, autosomal recessive (11), blepharophimosis (10), parietal foramina (10), pfeiffer syndrome (10), testicular disease (9), plagiocephaly (9), robinow syndrome (8), senile ectropion (7), vulvar sarcoma (7), intracranial hypotension (7), hematocele of tunica vaginalis testis (6), norwegian scabies (6), imperforate anus (6), ventricular septal defect (6), apert syndrome (6), intracranial abscess (6), vestibular nystagmus (5), interstitial emphysema (5), hemopneumothorax (5), localized osteosarcoma (5), ethmoid sinusitis (5), atypical choroid plexus papilloma (4), retinitis pigmentosa, y-linked (4), hemidystonia (4), gliosarcoma (3), breast cancer (2), urinary bladder cancer (2), bone development disease (1), aortic valve disease 1 (1), cardiomyopathy, familial hypertrophic (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 36.62 RPKM in Cells - Cultured fibroblasts
Total median expression: 172.63 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -148.10315-0.470 Picture PostScript Text
3' UTR -157.90706-0.224 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011598 - HLH_dom
IPR015789 - Twist

Pfam Domains:
PF00010 - Helix-loop-helix DNA-binding domain

SCOP Domains:
47459 - HLH, helix-loop-helix DNA-binding domain

ModBase Predicted Comparative 3D Structure on Q15672
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677 DNA binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0005515 protein binding
GO:0008134 transcription factor binding
GO:0019904 protein domain specific binding
GO:0042803 protein homodimerization activity
GO:0043425 bHLH transcription factor binding
GO:0046982 protein heterodimerization activity
GO:0046983 protein dimerization activity
GO:0070888 E-box binding

Biological Process:
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0001503 ossification
GO:0001649 osteoblast differentiation
GO:0001701 in utero embryonic development
GO:0001764 neuron migration
GO:0001843 neural tube closure
GO:0003180 aortic valve morphogenesis
GO:0003183 mitral valve morphogenesis
GO:0003203 endocardial cushion morphogenesis
GO:0003253 cardiac neural crest cell migration involved in outflow tract morphogenesis
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0007275 multicellular organism development
GO:0007517 muscle organ development
GO:0010628 positive regulation of gene expression
GO:0010718 positive regulation of epithelial to mesenchymal transition
GO:0014067 negative regulation of phosphatidylinositol 3-kinase signaling
GO:0019221 cytokine-mediated signaling pathway
GO:0030154 cell differentiation
GO:0030326 embryonic limb morphogenesis
GO:0030500 regulation of bone mineralization
GO:0032000 positive regulation of fatty acid beta-oxidation
GO:0032720 negative regulation of tumor necrosis factor production
GO:0032760 positive regulation of tumor necrosis factor production
GO:0033128 negative regulation of histone phosphorylation
GO:0035067 negative regulation of histone acetylation
GO:0035115 embryonic forelimb morphogenesis
GO:0035116 embryonic hindlimb morphogenesis
GO:0035137 hindlimb morphogenesis
GO:0035359 negative regulation of peroxisome proliferator activated receptor signaling pathway
GO:0042473 outer ear morphogenesis
GO:0042476 odontogenesis
GO:0042733 embryonic digit morphogenesis
GO:0043066 negative regulation of apoptotic process
GO:0043433 negative regulation of sequence-specific DNA binding transcription factor activity
GO:0043518 negative regulation of DNA damage response, signal transduction by p53 class mediator
GO:0044092 negative regulation of molecular function
GO:0045596 negative regulation of cell differentiation
GO:0045668 negative regulation of osteoblast differentiation
GO:0045766 positive regulation of angiogenesis
GO:0045843 negative regulation of striated muscle tissue development
GO:0045892 negative regulation of transcription, DNA-templated
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0048511 rhythmic process
GO:0048642 negative regulation of skeletal muscle tissue development
GO:0048701 embryonic cranial skeleton morphogenesis
GO:0048704 embryonic skeletal system morphogenesis
GO:0050679 positive regulation of epithelial cell proliferation
GO:0060021 palate development
GO:0060348 bone development
GO:0060363 cranial suture morphogenesis
GO:0060900 embryonic camera-type eye formation
GO:0061029 eyelid development in camera-type eye
GO:0061309 cardiac neural crest cell development involved in outflow tract morphogenesis
GO:0071363 cellular response to growth factor stimulus
GO:0071456 cellular response to hypoxia
GO:0071639 positive regulation of monocyte chemotactic protein-1 production
GO:2000144 positive regulation of DNA-templated transcription, initiation
GO:2000147 positive regulation of cell motility
GO:2000276 negative regulation of oxidative phosphorylation uncoupler activity
GO:2000679 positive regulation of transcription regulatory region DNA binding
GO:2000773 negative regulation of cellular senescence
GO:2000778 positive regulation of interleukin-6 secretion
GO:2000780 negative regulation of double-strand break repair
GO:2000793 cell proliferation involved in heart valve development
GO:2000802 positive regulation of endocardial cushion to mesenchymal transition involved in heart valve formation

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm


-  Descriptions from all associated GenBank mRNAs
  LF209517 - JP 2014500723-A/17020: Polycomb-Associated Non-Coding RNAs.
X99268 - H.sapiens mRNA for B-HLH DNA binding protein.
LF213785 - JP 2014500723-A/21288: Polycomb-Associated Non-Coding RNAs.
JD296430 - Sequence 277454 from Patent EP1572962.
JD268528 - Sequence 249552 from Patent EP1572962.
LF212486 - JP 2014500723-A/19989: Polycomb-Associated Non-Coding RNAs.
BC036704 - Homo sapiens twist homolog 1 (Drosophila), mRNA (cDNA clone MGC:12800 IMAGE:4125830), complete cds.
LF213286 - JP 2014500723-A/20789: Polycomb-Associated Non-Coding RNAs.
LF329236 - JP 2014500723-A/136739: Polycomb-Associated Non-Coding RNAs.
Y11178 - H.sapiens mRNA for twist protein, exon 1, partial.
JD474824 - Sequence 455848 from Patent EP1572962.
JD360242 - Sequence 341266 from Patent EP1572962.
JD355062 - Sequence 336086 from Patent EP1572962.
LF329235 - JP 2014500723-A/136738: Polycomb-Associated Non-Coding RNAs.
JD145736 - Sequence 126760 from Patent EP1572962.
JD115858 - Sequence 96882 from Patent EP1572962.
JD121704 - Sequence 102728 from Patent EP1572962.
DQ896770 - Synthetic construct Homo sapiens clone IMAGE:100011230; FLH199378.01L; RZPDo839C0481D twist homolog 1 (acrocephalosyndactyly 3; Saethre-Chotzen syndrome) (Drosophila) (TWIST1) gene, encodes complete protein.
AB587505 - Synthetic construct DNA, clone: pF1KB9657, Homo sapiens TWIST1 gene for twist homolog 1, without stop codon, in Flexi system.
JD151649 - Sequence 132673 from Patent EP1572962.
MA564813 - JP 2018138019-A/136739: Polycomb-Associated Non-Coding RNAs.
MA564812 - JP 2018138019-A/136738: Polycomb-Associated Non-Coding RNAs.
MA445094 - JP 2018138019-A/17020: Polycomb-Associated Non-Coding RNAs.
MA449362 - JP 2018138019-A/21288: Polycomb-Associated Non-Coding RNAs.
MA448063 - JP 2018138019-A/19989: Polycomb-Associated Non-Coding RNAs.
MA448863 - JP 2018138019-A/20789: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_arfPathway - Tumor Suppressor Arf Inhibits Ribosomal Biogenesis

Reactome (by CSHL, EBI, and GO)

Protein Q15672 (Reactome details) participates in the following event(s):

R-HSA-8940032 TWIST1 binds the RUNX2 gene promoter
R-HSA-9007860 RUNX2 binds TWIST1,(TWIST2)
R-HSA-8939902 Regulation of RUNX2 expression and activity
R-HSA-6785807 Interleukin-4 and 13 signaling
R-HSA-8878166 Transcriptional regulation by RUNX2
R-HSA-449147 Signaling by Interleukins
R-HSA-212436 Generic Transcription Pathway
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-168256 Immune System
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: A4D128, BHLHA38, ENST00000242261.1, ENST00000242261.2, ENST00000242261.3, ENST00000242261.4, ENST00000242261.5, NM_000474, Q15672, Q92487, Q99804, TWIST, TWST1_HUMAN, uc317ejw.1, uc317ejw.2
UCSC ID: ENST00000242261.6_7
RefSeq Accession: NM_000474.4
Protein: Q15672 (aka TWST1_HUMAN or TWS1_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene TWIST1:
scs (Saethre-Chotzen Syndrome)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.