Human Gene TXN (ENST00000374517.6_7) from GENCODE V47lift37
  Description: thioredoxin, transcript variant 1 (from RefSeq NM_003329.4)
Gencode Transcript: ENST00000374517.6_7
Gencode Gene: ENSG00000136810.13_9
Transcript (Including UTRs)
   Position: hg19 chr9:113,006,090-113,018,787 Size: 12,698 Total Exon Count: 5 Strand: -
Coding Region
   Position: hg19 chr9:113,006,437-113,018,715 Size: 12,279 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:113,006,090-113,018,787)mRNA (may differ from genome)Protein (105 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: THIO_HUMAN
DESCRIPTION: RecName: Full=Thioredoxin; Short=Trx; AltName: Full=ATL-derived factor; Short=ADF; AltName: Full=Surface-associated sulphydryl protein; Short=SASP;
FUNCTION: Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions. Plays a role in the reversible S-nitrosylation of cysteine residues in target proteins, and thereby contributes to the response to intracellular nitric oxide. Nitrosylates the active site Cys of CASP3 in response to nitric oxide (NO), and thereby inhibits caspase-3 activity. Induces the FOS/JUN AP-1 DNA-binding activity in ionizing radiation (IR) cells through its oxidation/reduction status and stimulates AP-1 transcriptional activity.
FUNCTION: ADF augments the expression of the interleukin-2 receptor TAC (IL2R/P55).
SUBUNIT: Homodimer; disulfide-linked. Interacts with TXNIP through the redox-active site. Interacts with MAP3K5 and CASP3. In case of infection, interacts with S.typhimurium protein slrP. Interacts with APEX1; the interaction stimulates the FOS/JUN AP-1 DNA- binding activity in a redox-dependent manner.
INTERACTION: Q92905:COPS5; NbExp=8; IntAct=EBI-594644, EBI-594661; Q99683:MAP3K5; NbExp=2; IntAct=EBI-594644, EBI-476263; Q99836:MYD88; NbExp=4; IntAct=EBI-594644, EBI-447677;
SUBCELLULAR LOCATION: Nucleus. Cytoplasm. Secreted. Note=Secreted by a leaderless secretory pathway. Predominantly in the cytoplasm in non irradiated cells. Radiation induces translocation of TRX from the cytoplasm to the nucleus.
INDUCTION: Up-regulated by ionizing radiation.
PTM: In the fully reduced protein, both Cys-69 and Cys-73 are nitrosylated in response to nitric oxide (NO). When two disulfide bonds are present in the protein, only Cys-73 is nitrosylated. Cys-73 can serve as donor for nitrosylation of target proteins.
PTM: In case of infection, ubiquitinated by S.typhimurium protein slrP, leading to its degradation.
SIMILARITY: Belongs to the thioredoxin family.
SIMILARITY: Contains 1 thioredoxin domain.
WEB RESOURCE: Name=NIEHS-SNPs; URL="http://egp.gs.washington.edu/data/txn/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: TXN
Diseases sorted by gene-association score: breast mucinous carcinoma (4), adult t-cell leukemia (4), myocarditis (3), malignant pleural mesothelioma (3), exencephaly (2), multiple sulfatase deficiency (2), morgagni cataract (1), trichosporonosis (1), pancreatic cystadenocarcinoma (1), infant botulism (1), inclusion conjunctivitis (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 409.87 RPKM in Esophagus - Mucosa
Total median expression: 3897.68 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -15.9072-0.221 Picture PostScript Text
3' UTR -52.30347-0.151 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR005746 - Thioredoxin
IPR012336 - Thioredoxin-like_fold
IPR017937 - Thioredoxin_CS
IPR013766 - Thioredoxin_domain

Pfam Domains:
PF00085 - Thioredoxin
PF02966 - Mitosis protein DIM1

SCOP Domains:
52833 - Thioredoxin-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1AIU - X-ray MuPIT 1AUC - X-ray 1CQG - NMR MuPIT 1CQH - NMR MuPIT 1ERT - X-ray MuPIT 1ERU - X-ray MuPIT 1ERV - X-ray MuPIT 1ERW - X-ray MuPIT 1M7T - NMR MuPIT 1MDI - NMR MuPIT 1MDJ - NMR MuPIT 1MDK - NMR MuPIT 1TRS - NMR MuPIT 1TRU - NMR MuPIT 1TRV - NMR MuPIT 1TRW - NMR MuPIT 1W1C - Model 1W1E - Model 2HSH - X-ray MuPIT 2HXK - X-ray MuPIT 2IFQ - X-ray MuPIT 2IIY - X-ray MuPIT 3E3E - X-ray MuPIT 3KD0 - X-ray MuPIT 3M9J - X-ray MuPIT 3M9K - X-ray MuPIT 3QFA - X-ray MuPIT 3QFB - X-ray MuPIT 3TRX - NMR MuPIT 4TRX - NMR MuPIT


ModBase Predicted Comparative 3D Structure on P10599
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologGenome Browser
Gene DetailsGene Details Gene Details Gene Details
Gene SorterGene Sorter Gene Sorter Gene Sorter
 RGDEnsembl  SGD
     Protein Sequence
     Alignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003723 RNA binding
GO:0004791 thioredoxin-disulfide reductase activity
GO:0005515 protein binding
GO:0015035 protein disulfide oxidoreductase activity
GO:0015037 peptide disulfide oxidoreductase activity
GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor
GO:0047134 protein-disulfide reductase activity

Biological Process:
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006662 glycerol ether metabolic process
GO:0007165 signal transduction
GO:0007267 cell-cell signaling
GO:0008283 cell proliferation
GO:0009314 response to radiation
GO:0032148 activation of protein kinase B activity
GO:0033138 positive regulation of peptidyl-serine phosphorylation
GO:0033158 regulation of protein import into nucleus, translocation
GO:0043388 positive regulation of DNA binding
GO:0045454 cell redox homeostasis
GO:0046826 negative regulation of protein export from nucleus
GO:0051897 positive regulation of protein kinase B signaling
GO:0055114 oxidation-reduction process
GO:0098869 cellular oxidant detoxification
GO:1903206 negative regulation of hydrogen peroxide-induced cell death

Cellular Component:
GO:0005576 extracellular region
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  LP747439 - Sequence 26 from Patent WO2018009939.
E01915 - cDNA encoding human adult T-cell leukemia derived factor.
X77584 - H.sapiens mRNA for ATL-derived factor/thiredoxin.
AF085844 - Homo sapiens full length insert cDNA clone YI46D09.
BC003377 - Homo sapiens thioredoxin, mRNA (cDNA clone MGC:5174 IMAGE:2901084), complete cds.
BC054866 - Homo sapiens thioredoxin, mRNA (cDNA clone MGC:61975 IMAGE:6463280), complete cds.
BX647247 - Homo sapiens mRNA; cDNA DKFZp686B1993 (from clone DKFZp686B1993).
HM005512 - Homo sapiens clone HTL-T-199 testicular tissue protein Li 199 mRNA, complete cds.
AK289508 - Homo sapiens cDNA FLJ76509 complete cds, highly similar to Homo sapiens thioredoxin (TXN), mRNA.
CQ857863 - Sequence 2 from Patent WO2004069990.
J04026 - Human thioredoxin (TXN) mRNA, complete cds.
AY004872 - Homo sapiens thioredoxin (TXN) mRNA, complete cds.
AF276919 - Homo sapiens thioredoxin 1 (TRX1) mRNA, complete cds.
AF313911 - Homo sapiens thioredoxin mRNA, complete cds.
JQ313905 - Homo sapiens thioredoxin (TXN) mRNA, complete cds.
AF065241 - Homo sapiens thioredoxin delta 3 (TXN delta 3) mRNA, partial cds.
KJ897717 - Synthetic construct Homo sapiens clone ccsbBroadEn_07111 TXN gene, encodes complete protein.
E06575 - cDNA encoding polypeptide which has human ADF(thioredoxin) activity.
E08964 - DNA encoding human ADF protein.
CR407665 - Homo sapiens full open reading frame cDNA clone RZPDo834G017D for gene TXN, thioredoxin complete cds, without stopcodon.
E05024 - Human ADF gene.
E08965 - DNA encoding human ADF protein.
JD517021 - Sequence 498045 from Patent EP1572962.
CQ857864 - Sequence 3 from Patent WO2004069990.
D28376 - Homo sapiens mRNA for thioredoxin, 5'UTR region.
JD227332 - Sequence 208356 from Patent EP1572962.
MB486579 - JP 2019531699-A/26: METHODS FOR DIAGNOSING AND TREATING CANCER.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P10599 (Reactome details) participates in the following event(s):

R-HSA-111751 RNR (M1M2) reduces nucleotide diphosphates to deoxynucleotide diphosphates (thioredoxin)
R-HSA-111804 RNR (M1M2B) reduces nucleotide diphosphates to deoxynucleotide diphosphates (thioredoxin)
R-HSA-1250264 TXNIP binds reduced thioredoxin
R-HSA-3341343 PRDX1,2,5 catalyze TXN reduced + H2O2 => TXN oxidized + 2H2O
R-HSA-3697882 PRDX5 reduces peroxynitrite to nitrite using TXN
R-HSA-5676917 MRSBs reduce L-methyl-(R)-S-oxide to L-methionine
R-HSA-5676940 MSRA reduces L-methyl-(S)-S-oxide to L-Methionine
R-HSA-73646 thioredoxin, oxidized + NADPH + H+ => thioredoxin, reduced + NADP+
R-HSA-1250253 TXNIP is released from oxidized thioredoxin
R-HSA-3225851 ROS oxidize thioredoxin and activate MAP3K5
R-HSA-499943 Interconversion of nucleotide di- and triphosphates
R-HSA-844456 The NLRP3 inflammasome
R-HSA-3299685 Detoxification of Reactive Oxygen Species
R-HSA-5628897 TP53 Regulates Metabolic Genes
R-HSA-5676934 Protein repair
R-HSA-2559580 Oxidative Stress Induced Senescence
R-HSA-15869 Metabolism of nucleotides
R-HSA-622312 Inflammasomes
R-HSA-2262752 Cellular responses to stress
R-HSA-3700989 Transcriptional Regulation by TP53
R-HSA-392499 Metabolism of proteins
R-HSA-2559583 Cellular Senescence
R-HSA-1430728 Metabolism
R-HSA-168643 Nucleotide-binding domain, leucine rich repeat containing receptor (NLR) signaling pathways
R-HSA-8953897 Cellular responses to external stimuli
R-HSA-212436 Generic Transcription Pathway
R-HSA-168249 Innate Immune System
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-168256 Immune System
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: B1ALW1, ENST00000374517.1, ENST00000374517.2, ENST00000374517.3, ENST00000374517.4, ENST00000374517.5, NM_003329, O60744, P10599, Q53X69, Q96KI3, Q9UDG5, THIO_HUMAN, TRDX, TRX, TRX1, uc318lqo.1, uc318lqo.2
UCSC ID: ENST00000374517.6_7
RefSeq Accession: NM_003329.4
Protein: P10599 (aka THIO_HUMAN)

-  Gene Model Information
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-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.