Human Gene UBE2E2 (ENST00000396703.6_5) from GENCODE V47lift37
  Description: ubiquitin conjugating enzyme E2 E2, transcript variant 1 (from RefSeq NM_152653.4)
Gencode Transcript: ENST00000396703.6_5
Gencode Gene: ENSG00000182247.11_10
Transcript (Including UTRs)
   Position: hg19 chr3:23,244,818-23,633,285 Size: 388,468 Total Exon Count: 6 Strand: +
Coding Region
   Position: hg19 chr3:23,250,191-23,631,322 Size: 381,132 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:23,244,818-23,633,285)mRNA (may differ from genome)Protein (201 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: UB2E2_HUMAN
DESCRIPTION: RecName: Full=Ubiquitin-conjugating enzyme E2 E2; EC=6.3.2.19; AltName: Full=UbcH8; AltName: Full=Ubiquitin carrier protein E2; AltName: Full=Ubiquitin-protein ligase E2;
FUNCTION: Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys- 11'- and 'Lys-48'-, as well as 'Lys-63'-linked polyubiquitination.
CATALYTIC ACTIVITY: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine.
PATHWAY: Protein modification; protein ubiquitination.
SIMILARITY: Belongs to the ubiquitin-conjugating enzyme family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 15.78 RPKM in Brain - Frontal Cortex (BA9)
Total median expression: 411.59 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -52.30146-0.358 Picture PostScript Text
3' UTR -474.171963-0.242 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000608 - UBQ-conjugat_E2
IPR023313 - UBQ-conjugating_AS
IPR016135 - UBQ-conjugating_enzyme/RWD

Pfam Domains:
PF00179 - Ubiquitin-conjugating enzyme

SCOP Domains:
54495 - UBC-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1Y6L - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q96LR5
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details  Gene Details  
Gene Sorter  Gene Sorter  
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004842 ubiquitin-protein transferase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016740 transferase activity
GO:0042296 ISG15 transferase activity
GO:0061631 ubiquitin conjugating enzyme activity

Biological Process:
GO:0006974 cellular response to DNA damage stimulus
GO:0016567 protein ubiquitination
GO:0032020 ISG15-protein conjugation
GO:0070534 protein K63-linked ubiquitination
GO:0070936 protein K48-linked ubiquitination
GO:0070979 protein K11-linked ubiquitination
GO:1900087 positive regulation of G1/S transition of mitotic cell cycle


-  Descriptions from all associated GenBank mRNAs
  AK307075 - Homo sapiens cDNA, FLJ97023.
AK057886 - Homo sapiens cDNA FLJ25157 fis, clone CBR08008, highly similar to UBIQUITIN-CONJUGATING ENZYME E2-23 KDA (EC 6.3.2.19).
BC022332 - Homo sapiens ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast), mRNA (cDNA clone MGC:22765 IMAGE:4295679), complete cds.
KJ892343 - Synthetic construct Homo sapiens clone ccsbBroadEn_01737 UBE2E2 gene, encodes complete protein.
JD393432 - Sequence 374456 from Patent EP1572962.
JD124028 - Sequence 105052 from Patent EP1572962.
JD391958 - Sequence 372982 from Patent EP1572962.
JD399259 - Sequence 380283 from Patent EP1572962.
JD164381 - Sequence 145405 from Patent EP1572962.
JD281691 - Sequence 262715 from Patent EP1572962.
JD164044 - Sequence 145068 from Patent EP1572962.
JD082125 - Sequence 63149 from Patent EP1572962.
JD295301 - Sequence 276325 from Patent EP1572962.
JD224091 - Sequence 205115 from Patent EP1572962.
JD101272 - Sequence 82296 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY-7511 - protein ubiquitination

Reactome (by CSHL, EBI, and GO)

Protein Q96LR5 (Reactome details) participates in the following event(s):

R-HSA-983152 Transfer of ubiquitin from E1 to E2
R-HSA-983140 Transfer of Ub from E2 to substrate and release of E2
R-HSA-983157 Interaction of E3 with substrate and E2-Ub complex
R-HSA-983168 Antigen processing: Ubiquitination & Proteasome degradation
R-HSA-983169 Class I MHC mediated antigen processing & presentation
R-HSA-1280218 Adaptive Immune System
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000396703.1, ENST00000396703.2, ENST00000396703.3, ENST00000396703.4, ENST00000396703.5, NM_152653, Q96LR5, UB2E2_HUMAN, UBCH8, uc318yle.1, uc318yle.2
UCSC ID: ENST00000396703.6_5
RefSeq Accession: NM_152653.4
Protein: Q96LR5 (aka UB2E2_HUMAN or UB6B_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.