Human Gene UBE2S (ENST00000264552.14_7) from GENCODE V47lift37
  Description: ubiquitin conjugating enzyme E2 S (from RefSeq NM_014501.3)
Gencode Transcript: ENST00000264552.14_7
Gencode Gene: ENSG00000108106.14_9
Transcript (Including UTRs)
   Position: hg19 chr19:55,911,113-55,919,156 Size: 8,044 Total Exon Count: 4 Strand: -
Coding Region
   Position: hg19 chr19:55,912,804-55,918,957 Size: 6,154 Coding Exon Count: 4 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:55,911,113-55,919,156)mRNA (may differ from genome)Protein (222 aa)
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BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: UBE2S_HUMAN
DESCRIPTION: RecName: Full=Ubiquitin-conjugating enzyme E2 S; EC=6.3.2.19; AltName: Full=E2-EPF; AltName: Full=Ubiquitin carrier protein S; AltName: Full=Ubiquitin-conjugating enzyme E2-24 kDa; AltName: Full=Ubiquitin-conjugating enzyme E2-EPF5; AltName: Full=Ubiquitin-protein ligase S;
FUNCTION: Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. Catalyzes 'Lys-11'-linked polyubiquitination. Acts as an essential factor of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated ubiquitin ligase that controls progression through mitosis. Acts by specifically elongating 'Lys-11'-linked polyubiquitin chains initiated by the E2 enzyme UBE2C/UBCH10 on APC/C substrates, enhancing the degradation of APC/C substrates by the proteasome and promoting mitotic exit. Also acts by elongating ubiquitin chains initiated by the E2 enzyme UBE2D1/UBCH5 in vitro; it is however unclear whether UBE2D1/UBCH5 acts as a E2 enzyme for the APC/C in vivo. Also involved in ubiquitination and subsequent degradation of VHL, resulting in an accumulation of HIF1A. In vitro able to promote polyubiquitination using all 7 ubiquitin Lys residues, except 'Lys-48'-linked polyubiquitination.
CATALYTIC ACTIVITY: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine.
PATHWAY: Protein modification; protein ubiquitination.
SUBUNIT: Component of the APC/C complex. Interacts with CDC20, FZR1/CDH1 and VHL.
PTM: Autoubiquitinated by the APC/C complex during G1, leading to its degradation by the proteasome.
SIMILARITY: Belongs to the ubiquitin-conjugating enzyme family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: UBE2S
Diseases sorted by gene-association score: parkinson disease 15, autosomal recessive (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 130.51 RPKM in Testis
Total median expression: 705.97 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -117.50199-0.590 Picture PostScript Text
3' UTR -594.901691-0.352 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000608 - UBQ-conjugat_E2
IPR023313 - UBQ-conjugating_AS
IPR016135 - UBQ-conjugating_enzyme/RWD

Pfam Domains:
PF00179 - Ubiquitin-conjugating enzyme

SCOP Domains:
54495 - UBC-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1ZDN - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q16763
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004842 ubiquitin-protein transferase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016740 transferase activity
GO:0031625 ubiquitin protein ligase binding
GO:0061630 ubiquitin protein ligase activity
GO:0061631 ubiquitin conjugating enzyme activity

Biological Process:
GO:0006464 cellular protein modification process
GO:0007049 cell cycle
GO:0010458 exit from mitosis
GO:0010994 free ubiquitin chain polymerization
GO:0016567 protein ubiquitination
GO:0031145 anaphase-promoting complex-dependent catabolic process
GO:0035519 protein K29-linked ubiquitination
GO:0044314 protein K27-linked ubiquitination
GO:0051301 cell division
GO:0070534 protein K63-linked ubiquitination
GO:0070979 protein K11-linked ubiquitination
GO:0085020 protein K6-linked ubiquitination
GO:1904668 positive regulation of ubiquitin protein ligase activity

Cellular Component:
GO:0005654 nucleoplasm
GO:0005680 anaphase-promoting complex
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  LP896144 - Sequence 1008 from Patent EP3253886.
M91670 - Human ubiquitin carrier protein (E2-EPF) mRNA, complete cds.
AB062397 - Homo sapiens OK/SW-cl.73 mRNA for ubiquitin carrier protein, complete cds.
BC004236 - Homo sapiens ubiquitin-conjugating enzyme E2S, mRNA (cDNA clone MGC:801 IMAGE:2988449), complete cds.
BC007554 - Homo sapiens ubiquitin-conjugating enzyme E2S, mRNA (cDNA clone MGC:15477 IMAGE:2967547), complete cds.
BC065364 - Homo sapiens ubiquitin-conjugating enzyme E2S, mRNA (cDNA clone MGC:71276 IMAGE:5434942), complete cds.
JD466978 - Sequence 448002 from Patent EP1572962.
KJ898690 - Synthetic construct Homo sapiens clone ccsbBroadEn_08084 UBE2S gene, encodes complete protein.
KJ898691 - Synthetic construct Homo sapiens clone ccsbBroadEn_08085 UBE2S gene, encodes complete protein.
CU688218 - Synthetic construct Homo sapiens gateway clone IMAGE:100021039 5' read UBE2S mRNA.
CU675699 - Synthetic construct Homo sapiens gateway clone IMAGE:100023219 5' read UBE2S mRNA.
JD021187 - Sequence 2211 from Patent EP1572962.
JD031411 - Sequence 12435 from Patent EP1572962.
JD078831 - Sequence 59855 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY-7511 - protein ubiquitination

Reactome (by CSHL, EBI, and GO)

Protein Q16763 (Reactome details) participates in the following event(s):

R-HSA-8852127 UBA6 conjugates ubiquitin to cytosolic E2 enzymes
R-HSA-8852129 UBA1 conjugates ubiquitin to cytosolic E2 enzymes
R-HSA-983152 Transfer of ubiquitin from E1 to E2
R-HSA-983140 Transfer of Ub from E2 to substrate and release of E2
R-HSA-8852130 UBA1 conjugates ubiquitin to nuclear E2 enzymes
R-HSA-983157 Interaction of E3 with substrate and E2-Ub complex
R-HSA-8866652 Synthesis of active ubiquitin: roles of E1 and E2 enzymes
R-HSA-983168 Antigen processing: Ubiquitination & Proteasome degradation
R-HSA-8852135 Protein ubiquitination
R-HSA-983169 Class I MHC mediated antigen processing & presentation
R-HSA-597592 Post-translational protein modification
R-HSA-1280218 Adaptive Immune System
R-HSA-392499 Metabolism of proteins
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: E2EPF, ENST00000264552.1, ENST00000264552.10, ENST00000264552.11, ENST00000264552.12, ENST00000264552.13, ENST00000264552.2, ENST00000264552.3, ENST00000264552.4, ENST00000264552.5, ENST00000264552.6, ENST00000264552.7, ENST00000264552.8, ENST00000264552.9, NM_014501, OK/SW-cl.73, Q16763, Q9BTC1, UBE2S_HUMAN, uc317htd.1, uc317htd.2
UCSC ID: ENST00000264552.14_7
RefSeq Accession: NM_014501.3
Protein: Q16763 (aka UBE2S_HUMAN or UBCE_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.