Human Gene ULK2 (ENST00000395544.9_7) from GENCODE V47lift37
  Description: unc-51 like autophagy activating kinase 2, transcript variant 1 (from RefSeq NM_014683.4)
Gencode Transcript: ENST00000395544.9_7
Gencode Gene: ENSG00000083290.20_10
Transcript (Including UTRs)
   Position: hg19 chr17:19,674,143-19,771,249 Size: 97,107 Total Exon Count: 27 Strand: -
Coding Region
   Position: hg19 chr17:19,679,662-19,770,730 Size: 91,069 Coding Exon Count: 27 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:19,674,143-19,771,249)mRNA (may differ from genome)Protein (1036 aa)
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-  Comments and Description Text from UniProtKB
  ID: ULK2_HUMAN
DESCRIPTION: RecName: Full=Serine/threonine-protein kinase ULK2; EC=2.7.11.1; AltName: Full=Unc-51-like kinase 2;
FUNCTION: Serine/threonine-protein kinase involved in autophagy in response to starvation. Acts upstream of phosphatidylinositol 3- kinase PIK3C3 to regulate the formation of autophagophores, the precursors of autophagosomes. Part of regulatory feedback loops in autophagy: acts both as a downstream effector and a negative regulator of mammalian target of rapamycin complex 1 (mTORC1) via interaction with RPTOR. Activated via phosphorylation by AMPK, also acts as a negative regulator of AMPK through phosphorylation of the AMPK subunits PRKAA1, PRKAB2 and PRKAG1. May phosphorylate ATG13/KIAA0652, FRS2, FRS3 and RPTOR; however such data need additional evidences. Not involved in ammonia-induced autophagy or in autophagic response of cerebellar granule neurons (CGN) to low potassium concentration. Plays a role early in neuronal differentiation and is required for granule cell axon formation: may govern axon formation via Ras-like GTPase signaling and through regulation of the Rab5-mediated endocytic pathways within developing axons.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
SUBUNIT: Interacts with SYNGAP1 (By similarity). Component of a complex consisting of ATG13/KIAA0652, ULK1 and RB1CC1/FIP200. Interacts (via C-terminus) with ATG13/KIAA0652. Associates with the mammalian target of rapamycin complex 1 (mTORC1) through an interaction with RPTOR.
SUBCELLULAR LOCATION: Cytoplasmic vesicle membrane; Peripheral membrane protein. Note=Localizes to pre-autophagosomal membrane.
DOMAIN: The CTD-like region mediates membrane-binding and incorporation into large protein complexes.
PTM: Autophosphorylated. In response to nutrient limitation, probably phosphorylated and activated by AMPK, leading to activate autophagy.
SIMILARITY: Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. APG1/unc-51/ULK1 subfamily.
SIMILARITY: Contains 1 protein kinase domain.
SEQUENCE CAUTION: Sequence=BAA31598.2; Type=Erroneous initiation; Note=Translation N-terminally shortened;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 23.87 RPKM in Testis
Total median expression: 354.25 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -328.50519-0.633 Picture PostScript Text
3' UTR -1678.605519-0.304 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR016237 - Ser/Thr_kin_STPK_Ulk-1/2
IPR008271 - Ser/Thr_kinase_AS
IPR022708 - Ser/Thr_kinase_C

Pfam Domains:
PF00069 - Protein kinase domain
PF01163 - RIO1 family
PF03109 - ABC1 atypical kinase-like domain
PF06293 - Lipopolysaccharide kinase (Kdo/WaaP) family
PF07714 - Protein tyrosine and serine/threonine kinase
PF12063 - Domain of unknown function (DUF3543)

SCOP Domains:
49742 - PHM/PNGase F
56112 - Protein kinase-like (PK-like)

ModBase Predicted Comparative 3D Structure on Q8IYT8
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details  Gene Details 
Gene SorterGene Sorter  Gene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity

Biological Process:
GO:0006468 protein phosphorylation
GO:0006914 autophagy
GO:0007165 signal transduction
GO:0007399 nervous system development
GO:0007409 axonogenesis
GO:0016310 phosphorylation
GO:0042594 response to starvation
GO:0046777 protein autophosphorylation
GO:0048671 negative regulation of collateral sprouting
GO:0048675 axon extension
GO:0075044 autophagy of host cells involved in interaction with symbiont

Cellular Component:
GO:0016020 membrane
GO:0030659 cytoplasmic vesicle membrane
GO:0031410 cytoplasmic vesicle
GO:0034045 pre-autophagosomal structure membrane


-  Descriptions from all associated GenBank mRNAs
  AL080134 - Homo sapiens mRNA; cDNA DKFZp434G043 (from clone DKFZp434G043).
BC034988 - Homo sapiens unc-51-like kinase 2 (C. elegans), mRNA (cDNA clone MGC:33037 IMAGE:5268025), complete cds.
BC039310 - Homo sapiens cDNA clone IMAGE:5285000, containing frame-shift errors.
JD059636 - Sequence 40660 from Patent EP1572962.
JD514072 - Sequence 495096 from Patent EP1572962.
JD154346 - Sequence 135370 from Patent EP1572962.
JD262541 - Sequence 243565 from Patent EP1572962.
JD562177 - Sequence 543201 from Patent EP1572962.
AB014523 - Homo sapiens KIAA0623 mRNA for KIAA0623 protein.
JD064732 - Sequence 45756 from Patent EP1572962.
JD486477 - Sequence 467501 from Patent EP1572962.
JD289753 - Sequence 270777 from Patent EP1572962.
JD123840 - Sequence 104864 from Patent EP1572962.
JD255114 - Sequence 236138 from Patent EP1572962.
JD046856 - Sequence 27880 from Patent EP1572962.
JD312337 - Sequence 293361 from Patent EP1572962.
JD418273 - Sequence 399297 from Patent EP1572962.
JD262601 - Sequence 243625 from Patent EP1572962.
JD563960 - Sequence 544984 from Patent EP1572962.
JD283658 - Sequence 264682 from Patent EP1572962.
JD475462 - Sequence 456486 from Patent EP1572962.
JD073355 - Sequence 54379 from Patent EP1572962.
JD183114 - Sequence 164138 from Patent EP1572962.
JD347347 - Sequence 328371 from Patent EP1572962.
JD287244 - Sequence 268268 from Patent EP1572962.
JD224070 - Sequence 205094 from Patent EP1572962.
JD377195 - Sequence 358219 from Patent EP1572962.
JD500016 - Sequence 481040 from Patent EP1572962.
JD368078 - Sequence 349102 from Patent EP1572962.
JD257466 - Sequence 238490 from Patent EP1572962.
JD291357 - Sequence 272381 from Patent EP1572962.
JD432750 - Sequence 413774 from Patent EP1572962.
JD204340 - Sequence 185364 from Patent EP1572962.
AK098316 - Homo sapiens cDNA FLJ40997 fis, clone UTERU2016147, highly similar to Serine/threonine-protein kinase ULK2 (EC 2.7.11.1).
JD365608 - Sequence 346632 from Patent EP1572962.
AK314345 - Homo sapiens cDNA, FLJ95108.
AB385364 - Synthetic construct DNA, clone: pF1KA0623, Homo sapiens ULK2 gene for serine/threonine-protein kinase ULK2, complete cds, without stop codon, in Flexi system.
JD456141 - Sequence 437165 from Patent EP1572962.
JD385485 - Sequence 366509 from Patent EP1572962.
JD396570 - Sequence 377594 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A8MY69, ENST00000395544.1, ENST00000395544.2, ENST00000395544.3, ENST00000395544.4, ENST00000395544.5, ENST00000395544.6, ENST00000395544.7, ENST00000395544.8, KIAA0623, NM_014683, O75119, Q8IYT8, uc318xmk.1, uc318xmk.2, ULK2_HUMAN
UCSC ID: ENST00000395544.9_7
RefSeq Accession: NM_014683.4
Protein: Q8IYT8 (aka ULK2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.