Human Gene UNC119 (ENST00000335765.9_6) from GENCODE V47lift37
  Description: unc-119 lipid binding chaperone, transcript variant 1 (from RefSeq NM_005148.4)
Gencode Transcript: ENST00000335765.9_6
Gencode Gene: ENSG00000109103.12_16
Transcript (Including UTRs)
   Position: hg19 chr17:26,873,726-26,879,642 Size: 5,917 Total Exon Count: 5 Strand: -
Coding Region
   Position: hg19 chr17:26,874,315-26,879,575 Size: 5,261 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:26,873,726-26,879,642)mRNA (may differ from genome)Protein (240 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: U119A_HUMAN
DESCRIPTION: RecName: Full=Protein unc-119 homolog A; AltName: Full=Retinal protein 4; Short=hRG4;
FUNCTION: Myristoyl-binding protein that acts as a cargo adapter: specifically binds the myristoyl moiety of a subset of N- terminally myristoylated proteins and is required for their localization. Binds myristoylated GNAT1 and is required for G- protein localization and trafficking in sensory neurons. Binds myristoylated NPHP3; however, in contrast to UNC119B, does not seem to play a major role in ciliary membrane localization of NPHP3. Does not bind all myristoylated proteins. Probably plays a role in trafficking proteins in photoreceptor cells.
SUBUNIT: Interacts with CABP4; in the absence of calcium. May interact with ARL1, ARL2 and ARL3 GTP-bound forms. Found in a complex with ARL3, RP2 and UNC119; RP2 induces hydrolysis of GTP ARL3 in the complex, leading to the release of UNC119. Interacts with NPHP3 (when myristoylated). Interacts with CYS1 (when myristoylated). Interacts with C5orf30; interaction only takes place when UNC119 is not liganded with myristoylated proteins.
SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton, centrosome.
TISSUE SPECIFICITY: Retinal-specific. Localized in photoreceptor synapses in the outer plexiform layer of the retina.
DOMAIN: Adopts an immunoglobulin-like beta-sandwich fold forming a hydrophobic cavity that capture N-terminally myristoylated target peptides (PubMed:21642972). Phe residues within the hydrophobic beta sandwich are required for myristate binding (PubMed:22085962).
DISEASE: Note=Defects in UNC119 may be a cause of cone-rod dystrophy. A mutation was found in a 57-year-old woman with late- onset cone-rod dystrophy: from 40 year old, the patient suffered from poor night vision, defective color vision and light- sensitivity. At 57 year old, she displayed reduced visual acuity, myopa, macular atrophy and pericentral ring scotomas. The disease was caused by a heterozygous mutation causing premature termination and truncated UNC119 protein with dominant-negative effect.
SIMILARITY: Belongs to the PDE6D/unc-119 family.
CAUTION: According to some authors, acts by extracting target proteins from membranes (PubMed:21642972). According to a another report, rather acts by targeting proteins to membranes (PubMed:22085962).

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: UNC119
Diseases sorted by gene-association score: immunodeficiency 13* (1228), cone-rod dystrophy* (704), leber congenital amaurosis 4* (283), retinitis pigmentosa* (140), cone-rod dystrophy, unc119-related* (100), fungal meningitis (11), acute retinal necrosis syndrome (7), lymphopenia (7), hereditary choroidal atrophy (6), partial central choroid dystrophy (5), cryptococcosis (5), primary systemic mycosis (5)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 26.51 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 403.44 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -28.0067-0.418 Picture PostScript Text
3' UTR -247.30589-0.420 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR008015 - GMP_PDE_delta
IPR014756 - Ig_E-set

Pfam Domains:
PF05351 - GMP-PDE, delta subunit

SCOP Domains:
81296 - E set domains

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3GQQ - X-ray MuPIT 3RBQ - X-ray MuPIT 4GOJ - X-ray MuPIT 4GOK - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q13432
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
Gene SorterGene Sorter Gene Sorter  
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0008289 lipid binding

Biological Process:
GO:0000281 mitotic cytokinesis
GO:0006897 endocytosis
GO:0007268 chemical synaptic transmission
GO:0007399 nervous system development
GO:0007601 visual perception
GO:0007602 phototransduction
GO:0015031 protein transport
GO:0030182 neuron differentiation
GO:0042953 lipoprotein transport
GO:0050896 response to stimulus
GO:0061098 positive regulation of protein tyrosine kinase activity
GO:1900186 negative regulation of clathrin-dependent endocytosis
GO:2001287 negative regulation of caveolin-mediated endocytosis

Cellular Component:
GO:0000922 spindle pole
GO:0005737 cytoplasm
GO:0005813 centrosome
GO:0005815 microtubule organizing center
GO:0005819 spindle
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0045171 intercellular bridge
GO:0051233 spindle midzone


-  Descriptions from all associated GenBank mRNAs
  BX647747 - Homo sapiens mRNA; cDNA DKFZp686P1187 (from clone DKFZp686P1187).
U40998 - Human retinal protein (HRG4) mRNA, complete cds.
BX648530 - Homo sapiens mRNA; cDNA DKFZp686M0885 (from clone DKFZp686M0885).
BX641031 - Homo sapiens mRNA; cDNA DKFZp686E1393 (from clone DKFZp686E1393).
AK124531 - Homo sapiens cDNA FLJ42540 fis, clone BRACE3004205, highly similar to Unc-119 protein homolog.
AF028788 - Homo sapiens UNC-119 (UNC-119) mRNA, complete cds.
AF028789 - Homo sapiens UNC-119b (UNC-119) mRNA, alternative splice form, complete cds.
BC027176 - Homo sapiens unc-119 homolog (C. elegans), mRNA (cDNA clone MGC:17070 IMAGE:4341426), complete cds.
AB593014 - Homo sapiens UNC119 mRNA for protein unc-119 homolog A, complete cds, clone: HP02611-RBb24D07.
JD386425 - Sequence 367449 from Patent EP1572962.
JD145849 - Sequence 126873 from Patent EP1572962.
JD226549 - Sequence 207573 from Patent EP1572962.
JD482173 - Sequence 463197 from Patent EP1572962.
JD394586 - Sequence 375610 from Patent EP1572962.
JD427296 - Sequence 408320 from Patent EP1572962.
JD216063 - Sequence 197087 from Patent EP1572962.
JD348403 - Sequence 329427 from Patent EP1572962.
JD157512 - Sequence 138536 from Patent EP1572962.
KJ892685 - Synthetic construct Homo sapiens clone ccsbBroadEn_02079 UNC119 gene, encodes complete protein.
AK292329 - Homo sapiens cDNA FLJ77511 complete cds, highly similar to Homo sapiens unc-119 homolog (C. elegans) (UNC119), transcript variant 2, mRNA.
JD336761 - Sequence 317785 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A8K8G4, ENST00000335765.1, ENST00000335765.2, ENST00000335765.3, ENST00000335765.4, ENST00000335765.5, ENST00000335765.6, ENST00000335765.7, ENST00000335765.8, F1T095, NM_005148, O95126, Q13432, RG4, U119A_HUMAN, uc317ujc.1, uc317ujc.2
UCSC ID: ENST00000335765.9_6
RefSeq Accession: NM_005148.4
Protein: Q13432 (aka U119A_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.