Human Gene UPP1 (ENST00000395564.9_4) from GENCODE V47lift37
  Description: uridine phosphorylase 1, transcript variant 1 (from RefSeq NM_003364.4)
Gencode Transcript: ENST00000395564.9_4
Gencode Gene: ENSG00000183696.14_12
Transcript (Including UTRs)
   Position: hg19 chr7:48,128,862-48,148,333 Size: 19,472 Total Exon Count: 9 Strand: +
Coding Region
   Position: hg19 chr7:48,134,381-48,147,954 Size: 13,574 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:48,128,862-48,148,333)mRNA (may differ from genome)Protein (310 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: UPP1_HUMAN
DESCRIPTION: RecName: Full=Uridine phosphorylase 1; Short=UPase 1; Short=UrdPase 1; EC=2.4.2.3;
FUNCTION: Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis.
CATALYTIC ACTIVITY: Uridine + phosphate = uracil + alpha-D-ribose 1-phosphate.
PATHWAY: Pyrimidine metabolism; UMP biosynthesis via salvage pathway; uracil from uridine (phosphorylase route): step 1/1.
SUBUNIT: Homodimer.
INDUCTION: By vitamin D3 and a mixture of inflammatory cytokines: TNF, IL1/interleukin-1 and IFNG/IFN-gamma.
SIMILARITY: Belongs to the PNP/UDP phosphorylase family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 76.20 RPKM in Whole Blood
Total median expression: 583.70 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -155.80352-0.443 Picture PostScript Text
3' UTR -91.80379-0.242 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR018017 - Nucleoside_phosphorylase
IPR018016 - Nucleoside_phosphorylase_CS
IPR000845 - Nucleoside_phosphorylase_d
IPR010059 - Uridine_phosphorylase_euk

Pfam Domains:
PF01048 - Phosphorylase superfamily

SCOP Domains:
53167 - Purine and uridine phosphorylases

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3EUE - X-ray MuPIT 3EUF - X-ray MuPIT 3NBQ - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q16831
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003824 catalytic activity
GO:0004850 uridine phosphorylase activity
GO:0016740 transferase activity
GO:0016757 transferase activity, transferring glycosyl groups
GO:0016763 transferase activity, transferring pentosyl groups

Biological Process:
GO:0006139 nucleobase-containing compound metabolic process
GO:0006218 uridine catabolic process
GO:0006220 pyrimidine nucleotide metabolic process
GO:0009116 nucleoside metabolic process
GO:0009166 nucleotide catabolic process
GO:0042149 cellular response to glucose starvation
GO:0043097 pyrimidine nucleoside salvage
GO:0044206 UMP salvage
GO:0046108 uridine metabolic process
GO:0046135 pyrimidine nucleoside catabolic process

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  BC007348 - Homo sapiens uridine phosphorylase 1, mRNA (cDNA clone MGC:1587 IMAGE:2966930), complete cds.
AK297863 - Homo sapiens cDNA FLJ60728 complete cds, highly similar to Uridine phosphorylase 1 (EC 2.4.2.3).
BC001405 - Homo sapiens uridine phosphorylase 1, mRNA (cDNA clone MGC:1588 IMAGE:3140458), complete cds.
JD404800 - Sequence 385824 from Patent EP1572962.
X90858 - H.sapiens mRNA for uridine phosphorylase.
BC053592 - Homo sapiens uridine phosphorylase 1, mRNA (cDNA clone IMAGE:5724026), complete cds.
BC047030 - Homo sapiens uridine phosphorylase 1, mRNA (cDNA clone MGC:54255 IMAGE:5549432), complete cds.
JD227457 - Sequence 208481 from Patent EP1572962.
JD151813 - Sequence 132837 from Patent EP1572962.
JD523214 - Sequence 504238 from Patent EP1572962.
JD338993 - Sequence 320017 from Patent EP1572962.
JD527659 - Sequence 508683 from Patent EP1572962.
JD069301 - Sequence 50325 from Patent EP1572962.
JD140535 - Sequence 121559 from Patent EP1572962.
BT006699 - Homo sapiens uridine phosphorylase mRNA, complete cds.
KJ901819 - Synthetic construct Homo sapiens clone ccsbBroadEn_11213 UPP1 gene, encodes complete protein.
CU692364 - Synthetic construct Homo sapiens gateway clone IMAGE:100021270 5' read UPP1 mRNA.
AK096167 - Homo sapiens cDNA FLJ38848 fis, clone MESAN2008334, highly similar to URIDINE PHOSPHORYLASE (EC 2.4.2.3).

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY-7181 - pyrimidine deoxyribonucleosides degradation
PWY-7209 - superpathway of pyrimidine ribonucleosides degradation
PWY0-1295 - pyrimidine ribonucleosides degradation

Reactome (by CSHL, EBI, and GO)

Protein Q16831 (Reactome details) participates in the following event(s):

R-HSA-74372 uracil + (deoxy)ribose 1-phosphate <=> (deoxy)uridine + orthophosphate [UPP]
R-HSA-74376 (deoxy)uridine + orthophosphate <=> uracil + (deoxy)ribose 1-phosphate (UPP)
R-HSA-73614 Pyrimidine salvage
R-HSA-73621 Pyrimidine catabolism
R-HSA-8956321 Nucleotide salvage
R-HSA-8956319 Nucleobase catabolism
R-HSA-15869 Metabolism of nucleotides
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: D3DVM4, ENST00000395564.1, ENST00000395564.2, ENST00000395564.3, ENST00000395564.4, ENST00000395564.5, ENST00000395564.6, ENST00000395564.7, ENST00000395564.8, NM_003364, Q15362, Q16831, uc318xmv.1, uc318xmv.2, UP, UPP1 , UPP1_HUMAN
UCSC ID: ENST00000395564.9_4
RefSeq Accession: NM_003364.4
Protein: Q16831 (aka UPP1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.