Human Gene UROD (ENST00000246337.9_5) from GENCODE V47lift37
  Description: uroporphyrinogen decarboxylase, transcript variant 4 (from RefSeq NR_158185.1)
Gencode Transcript: ENST00000246337.9_5
Gencode Gene: ENSG00000126088.14_18
Transcript (Including UTRs)
   Position: hg19 chr1:45,477,926-45,481,247 Size: 3,322 Total Exon Count: 10 Strand: +
Coding Region
   Position: hg19 chr1:45,477,938-45,481,170 Size: 3,233 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:45,477,926-45,481,247)mRNA (may differ from genome)Protein (367 aa)
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-  Comments and Description Text from UniProtKB
  ID: DCUP_HUMAN
DESCRIPTION: RecName: Full=Uroporphyrinogen decarboxylase; Short=UPD; Short=URO-D; EC=4.1.1.37;
FUNCTION: Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
CATALYTIC ACTIVITY: Uroporphyrinogen III = coproporphyrinogen + 4 CO(2).
PATHWAY: Porphyrin metabolism; protoporphyrin-IX biosynthesis; coproporphyrinogen-III from 5-aminolevulinate: step 4/4.
SUBUNIT: Homodimer.
SUBCELLULAR LOCATION: Cytoplasm.
DISEASE: Defects in UROD are the cause of familial porphyria cutanea tarda (FPCT) [MIM:176100]; also known as porphyria cutanea tarda type II. FPCT is an autosomal dominant disorder characterized by light-sensitive dermatitis, with onset in later life. It is associated with the excretion of large amounts of uroporphyrin in the urine. Iron overload is often present in association with varying degrees of liver damage. Besides the familial form of PCT, a relatively common idiosyncratic form is known in which only the liver enzyme is reduced. This form is referred to as porphyria cutanea tarda "sporadic" type or type I [MIM:176090]. PCT type I occurs sporadically as an unusual accompaniment of common hepatic disorders such as alcohol- associated liver disease.
DISEASE: Defects in UROD are the cause of hepatoerythropoietic porphyria (HEP) [MIM:176100]. HEP is a rare autosomal recessive disorder. It is the severe form of cutaneous porphyria, and presents in infancy. The level of UROD is very low in erythrocytes and cultured skin fibroblasts, suggesting that HEP is the homozygous state for porphyria cutanea tarda.
SIMILARITY: Belongs to the uroporphyrinogen decarboxylase family.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/UROD";
WEB RESOURCE: Name=Wikipedia; Note=Uroporphyrinogen III decarboxylase entry; URL="http://en.wikipedia.org/wiki/Uroporphyrinogen_III_decarboxylase";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: UROD
Diseases sorted by gene-association score: porphyria cutanea tarda* (1646), urod-related porphyrias* (500), familial porphyria cutanea tarda* (455), mandibulofacial dysostosis, guion-almeida type* (71), porphyria (42), cutaneous porphyria (35), siderosis (18), hypertelorism, microtia, facial clefting syndrome (16), porphyria, congenital erythropoietic (12), porphyria, acute intermittent (10), porphyria variegata (10), coproporphyria (9), hemochromatosis (9), breast giant fibroadenoma (8), hypertrichosis (8), chromosomal disease (8), acute porphyria (7), diabetes mellitus, transient neonatal, 1 (7), rhizomelic chondrodysplasia punctata, type 3 (7), alcohol abuse (5), patau syndrome (5), rhizomelic chondrodysplasia punctata, type 2 (5), rhizomelic chondrodysplasia punctata, type 1 (3)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 54.42 RPKM in Adrenal Gland
Total median expression: 1054.07 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
3' UTR -9.9077-0.129 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR006361 - Uroporphyrinogen_deCO2ase_HemE
IPR000257 - Uroporphyrinogen_deCOase

Pfam Domains:
PF01208 - Uroporphyrinogen decarboxylase (URO-D)

SCOP Domains:
51726 - UROD/MetE-like
51735 - NAD(P)-binding Rossmann-fold domains

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1JPH - X-ray MuPIT 1JPI - X-ray MuPIT 1JPK - X-ray MuPIT 1R3Q - X-ray MuPIT 1R3R - X-ray MuPIT 1R3S - X-ray MuPIT 1R3T - X-ray MuPIT 1R3V - X-ray MuPIT 1R3W - X-ray MuPIT 1R3Y - X-ray MuPIT 1URO - X-ray MuPIT 2Q6Z - X-ray MuPIT 2Q71 - X-ray MuPIT 3GVQ - X-ray MuPIT 3GVR - X-ray MuPIT 3GVV - X-ray MuPIT 3GVW - X-ray MuPIT 3GW0 - X-ray MuPIT 3GW3 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P06132
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologGenome Browser
Gene DetailsGene Details Gene Details Gene Details
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 RGDEnsembl  SGD
     Protein Sequence
     Alignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004853 uroporphyrinogen decarboxylase activity
GO:0005515 protein binding
GO:0016829 lyase activity
GO:0016831 carboxy-lyase activity

Biological Process:
GO:0006779 porphyrin-containing compound biosynthetic process
GO:0006782 protoporphyrinogen IX biosynthetic process
GO:0006783 heme biosynthetic process
GO:0042168 heme metabolic process

Cellular Component:
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  AK291877 - Homo sapiens cDNA FLJ76900 complete cds, highly similar to Homo sapiens uroporphyrinogen decarboxylase (UROD), mRNA.
AK310208 - Homo sapiens cDNA, FLJ17250.
AK309446 - Homo sapiens cDNA, FLJ99487.
AK309724 - Homo sapiens cDNA, FLJ99765.
AK315878 - Homo sapiens cDNA, FLJ79527 complete cds, moderately similar to Uroporphyrinogen decarboxylase (EC 4.1.1.37).
BC001778 - Homo sapiens uroporphyrinogen decarboxylase, mRNA (cDNA clone MGC:1856 IMAGE:3542421), complete cds.
AK295284 - Homo sapiens cDNA FLJ59203 complete cds, moderately similar to Uroporphyrinogen decarboxylase (EC 4.1.1.37).
M14016 - Human uroporphyrinogen decarboxylase mRNA, complete cds.
AF104421 - Homo sapiens isolate normal patient 1 uroporphyrinogen decarboxylase (UROD) mRNA, complete cds.
AF104422 - Homo sapiens isolate normal patient 2 uroporphyrinogen decarboxylase (UROD) mRNA, complete cds.
AF104423 - Homo sapiens isolate normal patient 3 uroporphyrinogen decarboxylase (UROD) mRNA, complete cds.
AF104424 - Homo sapiens isolate normal patient 4 uroporphyrinogen decarboxylase (UROD) mRNA, complete cds.
AF104425 - Homo sapiens isolate normal patient 5 uroporphyrinogen decarboxylase (UROD) mRNA, complete cds.
AF104426 - Homo sapiens isolate normal patient 6 uroporphyrinogen decarboxylase (UROD) mRNA, complete cds.
AF104427 - Homo sapiens isolate normal patient 7 uroporphyrinogen decarboxylase (UROD) mRNA, complete cds.
AF104428 - Homo sapiens isolate normal patient 8 uroporphyrinogen decarboxylase (UROD) mRNA, complete cds.
AF104429 - Homo sapiens isolate normal patient 9 uroporphyrinogen decarboxylase (UROD) mRNA, complete cds.
AF104430 - Homo sapiens isolate normal patient 10 uroporphyrinogen decarboxylase (UROD) mRNA, complete cds.
AF104431 - Homo sapiens isolate sporadic PCT patient 1 uroporphyrinogen decarboxylase (UROD) mRNA, complete cds.
AF104432 - Homo sapiens isolate sporadic PCT patient 2 uroporphyrinogen decarboxylase (UROD) mRNA, complete cds.
AF104433 - Homo sapiens isolate sporadic PCT patient 3 uroporphyrinogen decarboxylase (UROD) mRNA, complete cds.
AF104434 - Homo sapiens isolate sporadic PCT patient 4 uroporphyrinogen decarboxylase (UROD) mRNA, complete cds.
AF104435 - Homo sapiens isolate sporadic PCT patient 5 uroporphyrinogen decarboxylase (UROD) mRNA, complete cds.
AF104436 - Homo sapiens isolate sporadic PCT patient 6 uroporphyrinogen decarboxylase (UROD) mRNA, complete cds.
AF104437 - Homo sapiens isolate sporadic PCT patient 7 uroporphyrinogen decarboxylase (UROD) mRNA, complete cds.
AF104438 - Homo sapiens isolate sporadic PCT patient 8 uroporphyrinogen decarboxylase (UROD) mRNA, complete cds.
AF104439 - Homo sapiens isolate sporadic PCT patient 9 uroporphyrinogen decarboxylase (UROD) mRNA, complete cds.
AF104440 - Homo sapiens isolate sporadic PCT patient 10 uroporphyrinogen decarboxylase (UROD) mRNA, complete cds.
BX647308 - Homo sapiens mRNA; cDNA DKFZp686O11196 (from clone DKFZp686O11196).
AK225053 - Homo sapiens mRNA for uroporphyrinogen decarboxylase variant, clone: adSH01242.
AK308996 - Homo sapiens cDNA, FLJ99037.
DQ890688 - Synthetic construct clone IMAGE:100003318; FLH165142.01X; RZPDo839G06158D uroporphyrinogen decarboxylase (UROD) gene, encodes complete protein.
DQ893870 - Synthetic construct Homo sapiens clone IMAGE:100008330; FLH165138.01L; RZPDo839G06157D uroporphyrinogen decarboxylase (UROD) gene, encodes complete protein.
AB529048 - Synthetic construct DNA, clone: pF1KB3632, Homo sapiens UROD gene for uroporphyrinogen decarboxylase, without stop codon, in Flexi system.
KJ897730 - Synthetic construct Homo sapiens clone ccsbBroadEn_07124 UROD gene, encodes complete protein.
KR709857 - Synthetic construct Homo sapiens clone CCSBHm_00006834 UROD (UROD) mRNA, encodes complete protein.
KR709858 - Synthetic construct Homo sapiens clone CCSBHm_00006856 UROD (UROD) mRNA, encodes complete protein.
KR709859 - Synthetic construct Homo sapiens clone CCSBHm_00006867 UROD (UROD) mRNA, encodes complete protein.
KR709860 - Synthetic construct Homo sapiens clone CCSBHm_00006875 UROD (UROD) mRNA, encodes complete protein.
CR456976 - Homo sapiens full open reading frame cDNA clone RZPDo834C065D for gene UROD, uroporphyrinogen decarboxylase; complete cds, incl. stopcodon.
CR542057 - Homo sapiens full open reading frame cDNA clone RZPDo834A1036D for gene UROD, uroporphyrinogen decarboxylase; complete cds, without stopcodon.
BT006737 - Homo sapiens uroporphyrinogen decarboxylase mRNA, complete cds.
AK293702 - Homo sapiens cDNA FLJ50456 complete cds, highly similar to Uroporphyrinogen decarboxylase (EC 4.1.1.37).
JD437470 - Sequence 418494 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
HEME-BIOSYNTHESIS-II - heme biosynthesis from uroporphyrinogen-III I
PWY-5920 - heme biosynthesis

BioCarta from NCI Cancer Genome Anatomy Project
h_ahspPathway - Hemoglobin's Chaperone

Reactome (by CSHL, EBI, and GO)

Protein P06132 (Reactome details) participates in the following event(s):

R-HSA-189425 UROD decarboxylates URO3 to COPRO3
R-HSA-190182 UROD decarboxylates URO1 to COPRO1
R-HSA-189451 Heme biosynthesis
R-HSA-189445 Metabolism of porphyrins
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: A8K762, DCUP_HUMAN, ENST00000246337.1, ENST00000246337.2, ENST00000246337.3, ENST00000246337.4, ENST00000246337.5, ENST00000246337.6, ENST00000246337.7, ENST00000246337.8, NR_158185, P06132, Q16863, Q16883, Q53YB8, Q53ZP6, Q6IB28, Q9BUZ0, uc317etj.1, uc317etj.2, UROD
UCSC ID: ENST00000246337.9_5
RefSeq Accession: NM_000374.5
Protein: P06132 (aka DCUP_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene UROD:
hep (Hepatoerythropoietic Porphyria)
porphyria-ct (Familial Porphyria Cutanea Tarda)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.