Human Gene USP22 (ENST00000261497.9_8) from GENCODE V47lift37
  Description: ubiquitin specific peptidase 22 (from RefSeq NM_015276.2)
Gencode Transcript: ENST00000261497.9_8
Gencode Gene: ENSG00000124422.12_11
Transcript (Including UTRs)
   Position: hg19 chr17:20,902,909-20,946,324 Size: 43,416 Total Exon Count: 13 Strand: -
Coding Region
   Position: hg19 chr17:20,906,344-20,946,148 Size: 39,805 Coding Exon Count: 13 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:20,902,909-20,946,324)mRNA (may differ from genome)Protein (525 aa)
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-  Comments and Description Text from UniProtKB
  ID: UBP22_HUMAN
DESCRIPTION: RecName: Full=Ubiquitin carboxyl-terminal hydrolase 22; EC=3.4.19.12; AltName: Full=Deubiquitinating enzyme 22; AltName: Full=Ubiquitin thioesterase 22; AltName: Full=Ubiquitin-specific-processing protease 22;
FUNCTION: Histone deubiquitinating component of the transcription regulatory histone acetylation (HAT) complex SAGA. Catalyzes the deubiquitination of both histones H2A and H2B, thereby acting as a coactivator. Recruited to specific gene promoters by activators such as MYC, where it is required for transcription. Required for nuclear receptor-mediated transactivation and cell cycle progression.
CATALYTIC ACTIVITY: Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C- terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal).
SUBUNIT: Component of some SAGA transcription coactivator-HAT complexes, at least composed of ATXN7, ATXN7L3, ENY2, GCN5L2, SUPT3H, TAF10, TRRAP and USP22. Within the SAGA complex, ATXN7L3, ENY2 and USP22 form a subcomplex required for histone deubiquitination. Interacts directly with ATXN7L3; leading to its recritment to the SAGA complex.
SUBCELLULAR LOCATION: Nucleus (Probable).
TISSUE SPECIFICITY: Moderately expressed in various tissues including heart and skeletal muscle, and weakly expressed in lung and liver.
SIMILARITY: Belongs to the peptidase C19 family. UBP8 subfamily.
SIMILARITY: Contains 1 UBP-type zinc finger.
SEQUENCE CAUTION: Sequence=AAH25317.1; Type=Frameshift; Positions=355; Sequence=BAA83015.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 93.78 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 2026.35 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -67.90176-0.386 Picture PostScript Text
3' UTR -1246.003435-0.363 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR018200 - Pept_C19ubi-hydrolase_C_CS
IPR001394 - Peptidase_C19
IPR013083 - Znf_RING/FYVE/PHD
IPR001607 - Znf_UBP

Pfam Domains:
PF00443 - Ubiquitin carboxyl-terminal hydrolase
PF02148 - Zn-finger in ubiquitin-hydrolases and other protein
PF13423 - Ubiquitin carboxyl-terminal hydrolase

SCOP Domains:
48695 - Multiheme cytochromes
46626 - Cytochrome c
54001 - Cysteine proteinases
57850 - RING/U-box

ModBase Predicted Comparative 3D Structure on Q9UPT9
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003713 transcription coactivator activity
GO:0004843 thiol-dependent ubiquitin-specific protease activity
GO:0005515 protein binding
GO:0008233 peptidase activity
GO:0008234 cysteine-type peptidase activity
GO:0008270 zinc ion binding
GO:0016787 hydrolase activity
GO:0019899 enzyme binding
GO:0030374 ligand-dependent nuclear receptor transcription coactivator activity
GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
GO:0046872 metal ion binding
GO:0010485 H4 histone acetyltransferase activity

Biological Process:
GO:0006325 chromatin organization
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006508 proteolysis
GO:0006511 ubiquitin-dependent protein catabolic process
GO:0007049 cell cycle
GO:0009792 embryo development ending in birth or egg hatching
GO:0016574 histone ubiquitination
GO:0016578 histone deubiquitination
GO:0016579 protein deubiquitination
GO:0043967 histone H4 acetylation
GO:0045893 positive regulation of transcription, DNA-templated
GO:0045931 positive regulation of mitotic cell cycle

Cellular Component:
GO:0000124 SAGA complex
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0016607 nuclear speck
GO:0070461 SAGA-type complex


-  Descriptions from all associated GenBank mRNAs
  AL162082 - Homo sapiens mRNA; cDNA DKFZp434K1822 (from clone DKFZp434K1822); partial cds.
AL110213 - Homo sapiens mRNA; cDNA DKFZp564E013 (from clone DKFZp564E013).
AK025331 - Homo sapiens cDNA: FLJ21678 fis, clone COL09196.
BC007196 - Homo sapiens ubiquitin specific peptidase 22, mRNA (cDNA clone IMAGE:3613419), partial cds.
AK130677 - Homo sapiens cDNA FLJ27167 fis, clone SYN01643.
AB028986 - Homo sapiens KIAA1063 mRNA for KIAA1063 protein.
BX640815 - Homo sapiens mRNA; cDNA DKFZp686P16150 (from clone DKFZp686P16150).
AL049258 - Homo sapiens mRNA; cDNA DKFZp564E173 (from clone DKFZp564E173).
BC013364 - Homo sapiens ubiquitin specific peptidase 22, mRNA (cDNA clone IMAGE:3629270).
DQ585657 - Homo sapiens piRNA piR-52769, complete sequence.
JD221551 - Sequence 202575 from Patent EP1572962.
JD546159 - Sequence 527183 from Patent EP1572962.
JD278584 - Sequence 259608 from Patent EP1572962.
JD374154 - Sequence 355178 from Patent EP1572962.
JD077297 - Sequence 58321 from Patent EP1572962.
JD315624 - Sequence 296648 from Patent EP1572962.
JD271394 - Sequence 252418 from Patent EP1572962.
JD449438 - Sequence 430462 from Patent EP1572962.
JD309782 - Sequence 290806 from Patent EP1572962.
JD237018 - Sequence 218042 from Patent EP1572962.
JD257439 - Sequence 238463 from Patent EP1572962.
JD468498 - Sequence 449522 from Patent EP1572962.
JD190025 - Sequence 171049 from Patent EP1572962.
JD352185 - Sequence 333209 from Patent EP1572962.
JD143794 - Sequence 124818 from Patent EP1572962.
JD420395 - Sequence 401419 from Patent EP1572962.
JD254674 - Sequence 235698 from Patent EP1572962.
JD095619 - Sequence 76643 from Patent EP1572962.
JD308141 - Sequence 289165 from Patent EP1572962.
JD077900 - Sequence 58924 from Patent EP1572962.
JD427059 - Sequence 408083 from Patent EP1572962.
JD112727 - Sequence 93751 from Patent EP1572962.
JD308140 - Sequence 289164 from Patent EP1572962.
JD427060 - Sequence 408084 from Patent EP1572962.
JD320435 - Sequence 301459 from Patent EP1572962.
JD365133 - Sequence 346157 from Patent EP1572962.
JD513373 - Sequence 494397 from Patent EP1572962.
JD064555 - Sequence 45579 from Patent EP1572962.
JD242858 - Sequence 223882 from Patent EP1572962.
JD426748 - Sequence 407772 from Patent EP1572962.
JD274636 - Sequence 255660 from Patent EP1572962.
JD293298 - Sequence 274322 from Patent EP1572962.
JD562132 - Sequence 543156 from Patent EP1572962.
JD236262 - Sequence 217286 from Patent EP1572962.
DQ578998 - Homo sapiens piRNA piR-47110, complete sequence.
DQ579546 - Homo sapiens piRNA piR-47658, complete sequence.
JD114330 - Sequence 95354 from Patent EP1572962.
JD438940 - Sequence 419964 from Patent EP1572962.
BC009452 - Homo sapiens mRNA similar to non-stop (cDNA clone IMAGE:3532307).
JD272126 - Sequence 253150 from Patent EP1572962.
JD347557 - Sequence 328581 from Patent EP1572962.
DQ573706 - Homo sapiens piRNA piR-41818, complete sequence.
JD446020 - Sequence 427044 from Patent EP1572962.
JD426014 - Sequence 407038 from Patent EP1572962.
JD466236 - Sequence 447260 from Patent EP1572962.
JD209710 - Sequence 190734 from Patent EP1572962.
JD036993 - Sequence 18017 from Patent EP1572962.
DL491380 - Novel nucleic acids.
DQ591888 - Homo sapiens piRNA piR-59000, complete sequence.
DL490008 - Novel nucleic acids.
JD234644 - Sequence 215668 from Patent EP1572962.
JD203218 - Sequence 184242 from Patent EP1572962.
JD288172 - Sequence 269196 from Patent EP1572962.
JD068274 - Sequence 49298 from Patent EP1572962.
JD190693 - Sequence 171717 from Patent EP1572962.
JD168454 - Sequence 149478 from Patent EP1572962.
JD427652 - Sequence 408676 from Patent EP1572962.
JD338434 - Sequence 319458 from Patent EP1572962.
JD019150 - Sequence 174 from Patent EP1572962.
JD492489 - Sequence 473513 from Patent EP1572962.
JD056472 - Sequence 37496 from Patent EP1572962.
DQ586303 - Homo sapiens piRNA piR-53415, complete sequence.
JD194196 - Sequence 175220 from Patent EP1572962.
JD537136 - Sequence 518160 from Patent EP1572962.
DQ585081 - Homo sapiens piRNA piR-52193, complete sequence.
JD085939 - Sequence 66963 from Patent EP1572962.
JD494201 - Sequence 475225 from Patent EP1572962.
BC025317 - Homo sapiens ubiquitin specific peptidase 22, mRNA (cDNA clone IMAGE:3632384), partial cds.
JD083912 - Sequence 64936 from Patent EP1572962.
JD523517 - Sequence 504541 from Patent EP1572962.
JD345106 - Sequence 326130 from Patent EP1572962.
JD453743 - Sequence 434767 from Patent EP1572962.
JD210420 - Sequence 191444 from Patent EP1572962.
JD394382 - Sequence 375406 from Patent EP1572962.
JD512980 - Sequence 494004 from Patent EP1572962.
JD185189 - Sequence 166213 from Patent EP1572962.
JD221729 - Sequence 202753 from Patent EP1572962.
JD231145 - Sequence 212169 from Patent EP1572962.
JD219002 - Sequence 200026 from Patent EP1572962.
DQ576450 - Homo sapiens piRNA piR-44562, complete sequence.
JD525524 - Sequence 506548 from Patent EP1572962.
BC126898 - Homo sapiens ubiquitin specific peptidase 22, mRNA (cDNA clone MGC:125634 IMAGE:40027759), complete cds.
BC110499 - Homo sapiens ubiquitin specific peptidase 22, mRNA (cDNA clone IMAGE:40027756), partial cds.
KJ902325 - Synthetic construct Homo sapiens clone ccsbBroadEn_11719 USP22 gene, encodes complete protein.
AB590105 - Synthetic construct DNA, clone: pFN21AA1063, Homo sapiens USP22 gene for ubiquitin specific peptidase 22, without stop codon, in Flexi system.
BC050994 - Homo sapiens ubiquitin specific peptidase 22, mRNA (cDNA clone IMAGE:3344941).
BC084550 - Homo sapiens cDNA clone IMAGE:5094555.
AF118067 - Homo sapiens PRO1578 mRNA, complete cds.
JD029829 - Sequence 10853 from Patent EP1572962.
DQ581604 - Homo sapiens piRNA piR-49716, complete sequence.
JD432287 - Sequence 413311 from Patent EP1572962.
JD195552 - Sequence 176576 from Patent EP1572962.
JD190840 - Sequence 171864 from Patent EP1572962.
JD187135 - Sequence 168159 from Patent EP1572962.
JD070090 - Sequence 51114 from Patent EP1572962.
JD230663 - Sequence 211687 from Patent EP1572962.
JD257228 - Sequence 238252 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9UPT9 (Reactome details) participates in the following event(s):

R-HSA-3301237 KAT2 complexes acetylate histone H3
R-HSA-5690080 USP3,SAGA deubiquitinate Histone H2A,H2B
R-HSA-3214847 HATs acetylate histones
R-HSA-5689880 Ub-specific processing proteases
R-HSA-3247509 Chromatin modifying enzymes
R-HSA-5688426 Deubiquitination
R-HSA-4839726 Chromatin organization
R-HSA-597592 Post-translational protein modification
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: A0JNS3, ENST00000261497.1, ENST00000261497.2, ENST00000261497.3, ENST00000261497.4, ENST00000261497.5, ENST00000261497.6, ENST00000261497.7, ENST00000261497.8, KIAA1063, NM_015276, Q2NLE2, Q6MZY4, Q8TBS8, Q96IW5, Q9UPT9, UBP22_HUMAN, uc317gqq.1, uc317gqq.2, USP3L
UCSC ID: ENST00000261497.9_8
RefSeq Accession: NM_015276.2
Protein: Q9UPT9 (aka UBP22_HUMAN or UB22_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.