Human Gene USP33 (ENST00000370794.7_6) from GENCODE V47lift37
  Description: ubiquitin specific peptidase 33, transcript variant 2 (from RefSeq NM_201624.3)
Gencode Transcript: ENST00000370794.7_6
Gencode Gene: ENSG00000077254.14_15
Transcript (Including UTRs)
   Position: hg19 chr1:78,161,672-78,225,537 Size: 63,866 Total Exon Count: 24 Strand: -
Coding Region
   Position: hg19 chr1:78,163,002-78,207,382 Size: 44,381 Coding Exon Count: 23 

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RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:78,161,672-78,225,537)mRNA (may differ from genome)Protein (911 aa)
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-  Comments and Description Text from UniProtKB
  ID: UBP33_HUMAN
DESCRIPTION: RecName: Full=Ubiquitin carboxyl-terminal hydrolase 33; EC=3.4.19.12; AltName: Full=Deubiquitinating enzyme 33; AltName: Full=Ubiquitin thioesterase 33; AltName: Full=Ubiquitin-specific-processing protease 33; AltName: Full=VHL-interacting deubiquitinating enzyme 1; Short=hVDU1;
FUNCTION: Deubiquitinating enzyme involved in various processes such as cellular migration and beta-2 adrenergic receptor/ADRB2 recycling. Involved in cell migration via its interaction with intracellular domain of ROBO1, leading to regulate the Slit signaling. Plays a role in commissural axon guidance cross the ventral midline of the neural tube in a Slit-dependent manner, possibly by mediating the deubiquitination of ROBO1. Acts as a regulator of G-protein coupled receptor (GPCR) signaling by mediating the deubiquitination of beta-arrestins (ARRB1 and ARRB2) and beta-2 adrenergic receptor (ADRB2). Plays a central role in ADRB2 recycling and resensitization after prolonged agonist stimulation by constitutively binding ADRB2, mediating deubiquitination of ADRB2 and inhibiting lysosomal trafficking of ADRB2. Upon dissociation, it is probably transferred to the translocated beta-arrestins, leading to beta-arrestins deubiquitination and disengagement from ADRB2. This suggests the existence of a dynamic exchange between the ADRB2 and beta- arrestins. Deubiquitinates DIO2, thereby regulating thyroid hormone regulation. Mediates deubiquitination of both 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.
CATALYTIC ACTIVITY: Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C- terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal).
SUBUNIT: Interacts with VHL, leading to its ubiquitination and subsequent degradation. Interacts with ARRB1, ARRB2, ADRB2, DIO2 and ROBO1. Interacts with SELENBP1; in a selenium-dependent manner.
INTERACTION: Q13228:SELENBP1; NbExp=5; IntAct=EBI-719307, EBI-711619;
SUBCELLULAR LOCATION: Cytoplasm, perinuclear region. Note=According to PubMed:12865408, it localizes in the endoplasmic reticulum; however the relevance of such result is unclear.
TISSUE SPECIFICITY: Widely expressed.
DOMAIN: The UBP-type zinc finger binds 3 zinc ions. However, it does not bind ubiquitin, probably because the conserved Arg in position 86 is replaced by a Glu residue.
PTM: Ubiquitinated via a VHL-dependent pathway for proteasomal degradation.
SIMILARITY: Belongs to the peptidase C19 family. USP20/USP33 subfamily.
SIMILARITY: Contains 2 DUSP domains.
SIMILARITY: Contains 1 UBP-type zinc finger.
SEQUENCE CAUTION: Sequence=BAA83049.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 32.44 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 694.98 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -113.50261-0.435 Picture PostScript Text
3' UTR -346.901330-0.261 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR006615 - Pept_C19_DUSP
IPR018200 - Pept_C19ubi-hydrolase_C_CS
IPR001394 - Peptidase_C19
IPR013083 - Znf_RING/FYVE/PHD
IPR001607 - Znf_UBP

Pfam Domains:
PF00443 - Ubiquitin carboxyl-terminal hydrolase
PF02148 - Zn-finger in ubiquitin-hydrolases and other protein
PF06337 - DUSP domain
PF13423 - Ubiquitin carboxyl-terminal hydrolase

SCOP Domains:
56300 - Metallo-dependent phosphatases
54001 - Cysteine proteinases
143791 - DUSP-like
57850 - RING/U-box

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2UZG - NMR MuPIT


ModBase Predicted Comparative 3D Structure on Q8TEY7
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001664 G-protein coupled receptor binding
GO:0004197 cysteine-type endopeptidase activity
GO:0004843 thiol-dependent ubiquitin-specific protease activity
GO:0005515 protein binding
GO:0008233 peptidase activity
GO:0008234 cysteine-type peptidase activity
GO:0008270 zinc ion binding
GO:0016787 hydrolase activity
GO:0017160 Ral GTPase binding
GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
GO:0046872 metal ion binding
GO:0043130 ubiquitin binding

Biological Process:
GO:0006508 proteolysis
GO:0006511 ubiquitin-dependent protein catabolic process
GO:0006897 endocytosis
GO:0007411 axon guidance
GO:0008277 regulation of G-protein coupled receptor protein signaling pathway
GO:0009267 cellular response to starvation
GO:0010506 regulation of autophagy
GO:0016477 cell migration
GO:0016579 protein deubiquitination
GO:0032091 negative regulation of protein binding
GO:0032092 positive regulation of protein binding
GO:0050821 protein stabilization
GO:0051298 centrosome duplication
GO:0070536 protein K63-linked deubiquitination
GO:0071108 protein K48-linked deubiquitination

Cellular Component:
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005794 Golgi apparatus
GO:0005813 centrosome
GO:0005815 microtubule organizing center
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005925 focal adhesion
GO:0030891 VCB complex
GO:0044297 cell body
GO:0048471 perinuclear region of cytoplasm
GO:0005776 autophagosome


-  Descriptions from all associated GenBank mRNAs
  LF206375 - JP 2014500723-A/13878: Polycomb-Associated Non-Coding RNAs.
AL050140 - Homo sapiens mRNA; cDNA DKFZp586N041 (from clone DKFZp586N041).
LF383838 - JP 2014500723-A/191341: Polycomb-Associated Non-Coding RNAs.
AK094056 - Homo sapiens cDNA FLJ36737 fis, clone UTERU2013078.
AK023664 - Homo sapiens cDNA FLJ13602 fis, clone PLACE1010089, highly similar to Homo sapiens mRNA for KIAA1097 protein.
AB029020 - Homo sapiens KIAA1097 mRNA for KIAA1097 protein.
AF383172 - Homo sapiens pVHL-interacting deubiquitinating enzyme 1 type I (VDU1) mRNA, complete cds.
AF383173 - Homo sapiens pVHL-interacting deubiquitinating enzyme 1 type II (VDU1) mRNA, complete cds.
JD196715 - Sequence 177739 from Patent EP1572962.
JD281351 - Sequence 262375 from Patent EP1572962.
JD233895 - Sequence 214919 from Patent EP1572962.
JD080615 - Sequence 61639 from Patent EP1572962.
JD320090 - Sequence 301114 from Patent EP1572962.
JD052659 - Sequence 33683 from Patent EP1572962.
LF353665 - JP 2014500723-A/161168: Polycomb-Associated Non-Coding RNAs.
JD374321 - Sequence 355345 from Patent EP1572962.
JD506256 - Sequence 487280 from Patent EP1572962.
JD356557 - Sequence 337581 from Patent EP1572962.
JD341996 - Sequence 323020 from Patent EP1572962.
JD070733 - Sequence 51757 from Patent EP1572962.
JD514195 - Sequence 495219 from Patent EP1572962.
JD070734 - Sequence 51758 from Patent EP1572962.
JD514196 - Sequence 495220 from Patent EP1572962.
JD070735 - Sequence 51759 from Patent EP1572962.
JD514197 - Sequence 495221 from Patent EP1572962.
JD513633 - Sequence 494657 from Patent EP1572962.
JD295726 - Sequence 276750 from Patent EP1572962.
JD432787 - Sequence 413811 from Patent EP1572962.
JD432032 - Sequence 413056 from Patent EP1572962.
LF353664 - JP 2014500723-A/161167: Polycomb-Associated Non-Coding RNAs.
JD048678 - Sequence 29702 from Patent EP1572962.
AB385425 - Synthetic construct DNA, clone: pF1KA1097, Homo sapiens USP33 gene for ubiquitin carboxyl-terminal hydrolase 33, complete cds, without stop codon, in Flexi system.
LF353663 - JP 2014500723-A/161166: Polycomb-Associated Non-Coding RNAs.
AK225499 - Homo sapiens mRNA for ubiquitin specific protease 33 isoform 1 variant, clone: JTH14151.
BC016663 - Homo sapiens ubiquitin specific peptidase 33, mRNA (cDNA clone MGC:16868 IMAGE:3874822), complete cds.
AK022864 - Homo sapiens cDNA FLJ12802 fis, clone NT2RP2002124, weakly similar to UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4 (EC 3.1.2.15).
KJ893320 - Synthetic construct Homo sapiens clone ccsbBroadEn_02714 USP33 gene, encodes complete protein.
DQ891487 - Synthetic construct clone IMAGE:100004117; FLH177390.01X; RZPDo839H03124D ubiquitin specific peptidase 33 (USP33) gene, encodes complete protein.
DQ894672 - Synthetic construct Homo sapiens clone IMAGE:100009132; FLH177389.01L; RZPDo839H03123D ubiquitin specific peptidase 33 (USP33) gene, encodes complete protein.
LF353659 - JP 2014500723-A/161162: Polycomb-Associated Non-Coding RNAs.
LF353657 - JP 2014500723-A/161160: Polycomb-Associated Non-Coding RNAs.
AK308402 - Homo sapiens cDNA, FLJ98350.
LF353655 - JP 2014500723-A/161158: Polycomb-Associated Non-Coding RNAs.
LF353654 - JP 2014500723-A/161157: Polycomb-Associated Non-Coding RNAs.
LF353653 - JP 2014500723-A/161156: Polycomb-Associated Non-Coding RNAs.
CU677667 - Synthetic construct Homo sapiens gateway clone IMAGE:100017497 5' read USP33 mRNA.
LF353652 - JP 2014500723-A/161155: Polycomb-Associated Non-Coding RNAs.
LF353651 - JP 2014500723-A/161154: Polycomb-Associated Non-Coding RNAs.
JD444569 - Sequence 425593 from Patent EP1572962.
JD079094 - Sequence 60118 from Patent EP1572962.
JD473216 - Sequence 454240 from Patent EP1572962.
JD525665 - Sequence 506689 from Patent EP1572962.
JD408018 - Sequence 389042 from Patent EP1572962.
JD141307 - Sequence 122331 from Patent EP1572962.
MA619415 - JP 2018138019-A/191341: Polycomb-Associated Non-Coding RNAs.
MA441952 - JP 2018138019-A/13878: Polycomb-Associated Non-Coding RNAs.
MA589242 - JP 2018138019-A/161168: Polycomb-Associated Non-Coding RNAs.
MA589241 - JP 2018138019-A/161167: Polycomb-Associated Non-Coding RNAs.
MA589240 - JP 2018138019-A/161166: Polycomb-Associated Non-Coding RNAs.
MA589236 - JP 2018138019-A/161162: Polycomb-Associated Non-Coding RNAs.
MA589234 - JP 2018138019-A/161160: Polycomb-Associated Non-Coding RNAs.
MA589232 - JP 2018138019-A/161158: Polycomb-Associated Non-Coding RNAs.
MA589231 - JP 2018138019-A/161157: Polycomb-Associated Non-Coding RNAs.
MA589230 - JP 2018138019-A/161156: Polycomb-Associated Non-Coding RNAs.
MA589229 - JP 2018138019-A/161155: Polycomb-Associated Non-Coding RNAs.
MA589228 - JP 2018138019-A/161154: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q8TEY7 (Reactome details) participates in the following event(s):

R-HSA-5696945 USP33 deubiquitinates CCP110,ARRB
R-HSA-8986083 USP33 deubiquitinates ROBO1
R-HSA-5696968 USP20, USP33 deubiquitinate ADRB2
R-HSA-5689880 Ub-specific processing proteases
R-HSA-9010553 Regulation of expression of SLITs and ROBOs
R-HSA-5688426 Deubiquitination
R-HSA-376176 Signaling by ROBO receptors
R-HSA-597592 Post-translational protein modification
R-HSA-422475 Axon guidance
R-HSA-392499 Metabolism of proteins
R-HSA-1266738 Developmental Biology

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000370794.1, ENST00000370794.2, ENST00000370794.3, ENST00000370794.4, ENST00000370794.5, ENST00000370794.6, KIAA1097, NM_201624, Q8TEY6, Q8TEY7, Q96AV6, Q9H9F0, Q9UPQ5, UBP33_HUMAN, uc318iqx.1, uc318iqx.2, VDU1
UCSC ID: ENST00000370794.7_6
RefSeq Accession: NM_201624.3
Protein: Q8TEY7 (aka UBP33_HUMAN or UB33_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.