Human Gene USP45 (ENST00000500704.7_10) from GENCODE V47lift37
  Description: ubiquitin specific peptidase 45, transcript variant 16 (from RefSeq NR_144346.3)
Gencode Transcript: ENST00000500704.7_10
Gencode Gene: ENSG00000123552.18_14
Transcript (Including UTRs)
   Position: hg19 chr6:99,880,201-99,963,299 Size: 83,099 Total Exon Count: 18 Strand: -
Coding Region
   Position: hg19 chr6:99,883,592-99,958,096 Size: 74,505 Coding Exon Count: 17 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:99,880,201-99,963,299)mRNA (may differ from genome)Protein (814 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedReactomeUniProtKB
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: UBP45_HUMAN
DESCRIPTION: RecName: Full=Ubiquitin carboxyl-terminal hydrolase 45; EC=3.4.19.12; AltName: Full=Deubiquitinating enzyme 45; AltName: Full=Ubiquitin thioesterase 45; AltName: Full=Ubiquitin-specific-processing protease 45;
CATALYTIC ACTIVITY: Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C- terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal).
TISSUE SPECIFICITY: Broadly expressed, with highest levels in ovary, skeletal muscle and spleen.
SIMILARITY: Belongs to the peptidase C19 family.
SIMILARITY: Contains 1 UBP-type zinc finger.
SEQUENCE CAUTION: Sequence=CAI17192.1; Type=Erroneous gene model prediction; Sequence=CAI19761.1; Type=Erroneous gene model prediction;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 6.91 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 100.35 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -13.8042-0.329 Picture PostScript Text
3' UTR -762.003391-0.225 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR018200 - Pept_C19ubi-hydrolase_C_CS
IPR001394 - Peptidase_C19
IPR013083 - Znf_RING/FYVE/PHD
IPR001607 - Znf_UBP

Pfam Domains:
PF00443 - Ubiquitin carboxyl-terminal hydrolase
PF02148 - Zn-finger in ubiquitin-hydrolases and other protein

SCOP Domains:
54001 - Cysteine proteinases
57850 - RING/U-box

ModBase Predicted Comparative 3D Structure on Q70EL2
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004843 thiol-dependent ubiquitin-specific protease activity
GO:0008233 peptidase activity
GO:0008234 cysteine-type peptidase activity
GO:0008270 zinc ion binding
GO:0016787 hydrolase activity
GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
GO:0046872 metal ion binding

Biological Process:
GO:0006281 DNA repair
GO:0006508 proteolysis
GO:0006511 ubiquitin-dependent protein catabolic process
GO:0016579 protein deubiquitination
GO:0070911 global genome nucleotide-excision repair

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm


-  Descriptions from all associated GenBank mRNAs
  LF383848 - JP 2014500723-A/191351: Polycomb-Associated Non-Coding RNAs.
AK123299 - Homo sapiens cDNA FLJ41305 fis, clone BRAMY2042244.
AL832037 - Homo sapiens mRNA; cDNA DKFZp313A2010 (from clone DKFZp313A2010).
AL832040 - Homo sapiens mRNA; cDNA DKFZp313B2010 (from clone DKFZp313B2010).
AL832030 - Homo sapiens mRNA; cDNA DKFZp451O034 (from clone DKFZp451O034).
AL713747 - Homo sapiens mRNA; cDNA DKFZp451H032 (from clone DKFZp451H032).
BC150648 - Homo sapiens ubiquitin specific peptidase 45, mRNA (cDNA clone MGC:183559 IMAGE:9057019), complete cds.
BC157838 - Homo sapiens ubiquitin specific peptidase 45, mRNA (cDNA clone MGC:189733 IMAGE:9057057), complete cds.
LF353962 - JP 2014500723-A/161465: Polycomb-Associated Non-Coding RNAs.
LF353961 - JP 2014500723-A/161464: Polycomb-Associated Non-Coding RNAs.
LF353960 - JP 2014500723-A/161463: Polycomb-Associated Non-Coding RNAs.
LF353959 - JP 2014500723-A/161462: Polycomb-Associated Non-Coding RNAs.
LF353958 - JP 2014500723-A/161461: Polycomb-Associated Non-Coding RNAs.
LF353957 - JP 2014500723-A/161460: Polycomb-Associated Non-Coding RNAs.
LF353956 - JP 2014500723-A/161459: Polycomb-Associated Non-Coding RNAs.
AJ583819 - Homo sapiens mRNA for ubiquitin specific proteinase 45 (USP45 gene).
BC172477 - Synthetic construct Homo sapiens clone IMAGE:100069171, MGC:199182 ubiquitin specific peptidase 45 (USP45) mRNA, encodes complete protein.
BC156218 - Synthetic construct Homo sapiens clone IMAGE:100061542, MGC:190019 ubiquitin specific peptidase 45 (USP45) mRNA, encodes complete protein.
AK310643 - Homo sapiens cDNA, FLJ17685.
LF353947 - JP 2014500723-A/161450: Polycomb-Associated Non-Coding RNAs.
BC005991 - Homo sapiens ubiquitin specific peptidase 45, mRNA (cDNA clone IMAGE:4047601), complete cds.
KJ904932 - Synthetic construct Homo sapiens clone ccsbBroadEn_14326 USP45 gene, encodes complete protein.
CU675217 - Synthetic construct Homo sapiens gateway clone IMAGE:100016976 5' read USP45 mRNA.
LF353945 - JP 2014500723-A/161448: Polycomb-Associated Non-Coding RNAs.
LF353943 - JP 2014500723-A/161446: Polycomb-Associated Non-Coding RNAs.
LF353942 - JP 2014500723-A/161445: Polycomb-Associated Non-Coding RNAs.
LF353940 - JP 2014500723-A/161443: Polycomb-Associated Non-Coding RNAs.
MA619425 - JP 2018138019-A/191351: Polycomb-Associated Non-Coding RNAs.
MA589539 - JP 2018138019-A/161465: Polycomb-Associated Non-Coding RNAs.
MA589538 - JP 2018138019-A/161464: Polycomb-Associated Non-Coding RNAs.
MA589537 - JP 2018138019-A/161463: Polycomb-Associated Non-Coding RNAs.
MA589536 - JP 2018138019-A/161462: Polycomb-Associated Non-Coding RNAs.
MA589535 - JP 2018138019-A/161461: Polycomb-Associated Non-Coding RNAs.
MA589534 - JP 2018138019-A/161460: Polycomb-Associated Non-Coding RNAs.
MA589533 - JP 2018138019-A/161459: Polycomb-Associated Non-Coding RNAs.
MA589524 - JP 2018138019-A/161450: Polycomb-Associated Non-Coding RNAs.
MA589522 - JP 2018138019-A/161448: Polycomb-Associated Non-Coding RNAs.
MA589520 - JP 2018138019-A/161446: Polycomb-Associated Non-Coding RNAs.
MA589519 - JP 2018138019-A/161445: Polycomb-Associated Non-Coding RNAs.
MA589517 - JP 2018138019-A/161443: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q70EL2 (Reactome details) participates in the following event(s):

R-HSA-5696465 USP45 deubiquitinates ERCC1
R-HSA-5696395 Formation of Incision Complex in GG-NER
R-HSA-5696399 Global Genome Nucleotide Excision Repair (GG-NER)
R-HSA-5696398 Nucleotide Excision Repair
R-HSA-73894 DNA Repair

-  Other Names for This Gene
  Alternate Gene Symbols: B2RXG0, ENST00000500704.1, ENST00000500704.2, ENST00000500704.3, ENST00000500704.4, ENST00000500704.5, ENST00000500704.6, NR_144346, Q5T062, Q70EL2, Q86T44, Q86TC0, Q9BRU1, UBP45_HUMAN, uc322vkp.1, uc322vkp.2
UCSC ID: ENST00000500704.7_10
RefSeq Accession: NM_001346022.3
Protein: Q70EL2 (aka UBP45_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.