Human Gene USP8 (ENST00000307179.9_4) from GENCODE V47lift37
  Description: ubiquitin specific peptidase 8, transcript variant 1 (from RefSeq NM_005154.5)
Gencode Transcript: ENST00000307179.9_4
Gencode Gene: ENSG00000138592.14_12
Transcript (Including UTRs)
   Position: hg19 chr15:50,716,602-50,806,618 Size: 90,017 Total Exon Count: 20 Strand: +
Coding Region
   Position: hg19 chr15:50,731,271-50,791,285 Size: 60,015 Coding Exon Count: 19 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:50,716,602-50,806,618)mRNA (may differ from genome)Protein (1118 aa)
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-  Comments and Description Text from UniProtKB
  ID: UBP8_HUMAN
DESCRIPTION: RecName: Full=Ubiquitin carboxyl-terminal hydrolase 8; EC=3.4.19.12; AltName: Full=Deubiquitinating enzyme 8; AltName: Full=Ubiquitin isopeptidase Y; Short=hUBPy; AltName: Full=Ubiquitin thioesterase 8; AltName: Full=Ubiquitin-specific-processing protease 8;
FUNCTION: Hydrolase that can remove conjugated ubiquitin from proteins and therefore plays an important regulatory role at the level of protein turnover by preventing degradation. Converts both 'Lys-48' an 'Lys-63'-linked ubiquitin chains. Catalytic activity is enhanced in the M phase. Involved in cell proliferation. Required to enter into S phase in response to serum stimulation. May regulate T-cell anergy mediated by RNF128 via the formation of a complex containing RNF128 and OTUB1. Probably regulates the stability of STAM2 and RASGRF1. Regulates endosomal ubiquitin dynamics, cargo sorting, membrane traffic at early endosomes, and maintenance of ESCRT-0 stability. The level of protein ubiquitination on endosomes is essential for maintaining the morphology of the organelle. Deubiquitinates EPS15 and controles tyrosine kinase stability. Removes conjugated ubiquitin from EGFR thus regulating EGFR degradation and downstream MAPK signaling. Involved in acrosome biogenesis through interaction with the spermatid ESCRT-0 complex and microtubules. Deubiquitinates BIRC6/bruce and KIF23/MKLP1.
CATALYTIC ACTIVITY: Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C- terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal).
SUBUNIT: Forms a ternary complex with RNF128 and OTUB1. Interacts (via C-terminal UCH catalytic domain) with OTUB1 isoform 1. Interacts with STAM2 (via SH3 domain). Interacts with DNAJB3, EGFR, EPS15, RASGRF1, RNF41, YWHAE, YWHAG and YWHAZ (By similarity). Interacts with NBR1, RASGRF1, RNF41 and IST1. Associates with the ESCRT-0 complex and with microtubules (By similarity). Interacts with BIRC6/bruce and KIF23/MKLP1.
INTERACTION: Q9HD42:CHMP1A; NbExp=2; IntAct=EBI-1050865, EBI-1057156; Q7LBR1:CHMP1B; NbExp=4; IntAct=EBI-1050865, EBI-2118090;
SUBCELLULAR LOCATION: Cytoplasm. Nucleus (By similarity). Endosome membrane; Peripheral membrane protein. Cell membrane; Peripheral membrane protein.
INDUCTION: Upon growth stimulation in starved human fibroblasts. Decreases in response to growth arrest induced by cell-cell contact.
DOMAIN: The MIT domain is required for endosomal localization, CHMP1B-binding, maintenance of ESCRT-0 stability and EGFR degradation.
DOMAIN: The rhodanese domain is sufficent for RNF41-binding (By similarity).
PTM: Phosphorylation of Ser-718 is essential for interaction with YWHAE and for cytosol localization (By similarity). Undergoes dephosphorylation at Ser-718 in the M phase (By similarity). Tyrosine-phosphorylated in its N-terminal half in an EGFR- dependent manner (By similarity).
PTM: Ubiquitinated. Inactive form is mostly monoubiquitinated, but polyubiquitination happens too. Ubiquitination is increased in EGF-stimulated cells. Ubiquitination of active form is undetectable, suggesting a possibility that USP8 deubiquitinates itself, thereby regulating its own function (By similarity).
SIMILARITY: Belongs to the peptidase C19 family.
SIMILARITY: Contains 1 MIT domain.
SIMILARITY: Contains 1 rhodanese domain.
SEQUENCE CAUTION: Sequence=AAH38801.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence; Sequence=AAH51345.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: USP8
Diseases sorted by gene-association score: pituitary adenoma, acth-secreting* (766), autosomal recessive spastic paraplegia type 59* (350), spastic paraplegia 59* (100)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 15.91 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 412.40 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -55.80175-0.319 Picture PostScript Text
3' UTR -5062.9015333-0.330 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR015063 - DUF1873
IPR018200 - Pept_C19ubi-hydrolase_C_CS
IPR001394 - Peptidase_C19
IPR001763 - Rhodanese-like_dom

Pfam Domains:
PF00443 - Ubiquitin carboxyl-terminal hydrolase
PF00581 - Rhodanese-like domain
PF08969 - USP8 dimerisation domain
PF13423 - Ubiquitin carboxyl-terminal hydrolase

SCOP Domains:
140856 - USP8 N-terminal domain-like
51045 - WW domain
52821 - Rhodanese/Cell cycle control phosphatase
54001 - Cysteine proteinases

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1WHB - NMR MuPIT 2A9U - X-ray MuPIT 2GFO - X-ray MuPIT 2GWF - X-ray MuPIT 3N3K - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P40818
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details  Gene Details 
Gene SorterGene Sorter  Gene Sorter 
 RGD  WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004197 cysteine-type endopeptidase activity
GO:0004843 thiol-dependent ubiquitin-specific protease activity
GO:0005515 protein binding
GO:0008233 peptidase activity
GO:0008234 cysteine-type peptidase activity
GO:0016787 hydrolase activity
GO:0017124 SH3 domain binding
GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
GO:0045296 cadherin binding

Biological Process:
GO:0000281 mitotic cytokinesis
GO:0006508 proteolysis
GO:0006511 ubiquitin-dependent protein catabolic process
GO:0007032 endosome organization
GO:0007049 cell cycle
GO:0008283 cell proliferation
GO:0016579 protein deubiquitination
GO:0070536 protein K63-linked deubiquitination
GO:0071108 protein K48-linked deubiquitination
GO:0071549 cellular response to dexamethasone stimulus
GO:0090263 positive regulation of canonical Wnt signaling pathway
GO:1990090 cellular response to nerve growth factor stimulus

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005768 endosome
GO:0005769 early endosome
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0010008 endosome membrane
GO:0014069 postsynaptic density
GO:0016020 membrane
GO:0019897 extrinsic component of plasma membrane
GO:0030496 midbody
GO:0031313 extrinsic component of endosome membrane
GO:0043197 dendritic spine


-  Descriptions from all associated GenBank mRNAs
  AK292400 - Homo sapiens cDNA FLJ76940 complete cds, highly similar to Homo sapiens ubiquitin specific peptidase 8 (USP8), mRNA.
BX537420 - Homo sapiens mRNA; cDNA DKFZp686M2040 (from clone DKFZp686M2040); complete cds.
LF383731 - JP 2014500723-A/191234: Polycomb-Associated Non-Coding RNAs.
AK296480 - Homo sapiens cDNA FLJ55333 complete cds, highly similar to Ubiquitin carboxyl-terminal hydrolase 8 (EC 3.1.2.15).
BC038801 - Homo sapiens ubiquitin specific peptidase 8, mRNA (cDNA clone IMAGE:4341874), partial cds.
D29956 - Homo sapiens KIAA0055 mRNA.
BC015545 - Homo sapiens ubiquitin specific peptidase 8, mRNA (cDNA clone IMAGE:3914321), partial cds.
BC110590 - Homo sapiens ubiquitin specific peptidase 8, mRNA (cDNA clone MGC:129718 IMAGE:40027270), complete cds.
BC092443 - Homo sapiens ubiquitin specific peptidase 8, mRNA (cDNA clone IMAGE:30352267).
BC026954 - Homo sapiens ubiquitin specific peptidase 8, mRNA (cDNA clone IMAGE:4397858), partial cds.
BC051345 - Homo sapiens ubiquitin specific peptidase 8, mRNA (cDNA clone IMAGE:6429817), partial cds.
MA619308 - JP 2018138019-A/191234: Polycomb-Associated Non-Coding RNAs.
JD278519 - Sequence 259543 from Patent EP1572962.
JD080711 - Sequence 61735 from Patent EP1572962.
BC062694 - Homo sapiens ubiquitin specific peptidase 8, mRNA (cDNA clone IMAGE:4043464).
JD331507 - Sequence 312531 from Patent EP1572962.
AB385270 - Synthetic construct DNA, clone: pF1KA0055, Homo sapiens USP8 gene for ubiquitin carboxyl-terminal hydrolase 8, complete cds, without stop codon, in Flexi system.
KJ892687 - Synthetic construct Homo sapiens clone ccsbBroadEn_02081 USP8 gene, encodes complete protein.
LF349305 - JP 2014500723-A/156808: Polycomb-Associated Non-Coding RNAs.
LF349306 - JP 2014500723-A/156809: Polycomb-Associated Non-Coding RNAs.
LF349310 - JP 2014500723-A/156813: Polycomb-Associated Non-Coding RNAs.
LF349311 - JP 2014500723-A/156814: Polycomb-Associated Non-Coding RNAs.
LF349312 - JP 2014500723-A/156815: Polycomb-Associated Non-Coding RNAs.
JD087355 - Sequence 68379 from Patent EP1572962.
LF349315 - JP 2014500723-A/156818: Polycomb-Associated Non-Coding RNAs.
LF349318 - JP 2014500723-A/156821: Polycomb-Associated Non-Coding RNAs.
LF349319 - JP 2014500723-A/156822: Polycomb-Associated Non-Coding RNAs.
AK300590 - Homo sapiens cDNA FLJ53203 complete cds, highly similar to Ubiquitin carboxyl-terminal hydrolase 8 (EC 3.1.2.15).
LF349320 - JP 2014500723-A/156823: Polycomb-Associated Non-Coding RNAs.
AK091775 - Homo sapiens cDNA FLJ34456 fis, clone HLUNG2002659, highly similar to Ubiquitin carboxyl-terminal hydrolase 8 (EC3.1.2.15).
LF349323 - JP 2014500723-A/156826: Polycomb-Associated Non-Coding RNAs.
JD337356 - Sequence 318380 from Patent EP1572962.
JD051798 - Sequence 32822 from Patent EP1572962.
JD199055 - Sequence 180079 from Patent EP1572962.
LF349324 - JP 2014500723-A/156827: Polycomb-Associated Non-Coding RNAs.
LF349325 - JP 2014500723-A/156828: Polycomb-Associated Non-Coding RNAs.
JD375293 - Sequence 356317 from Patent EP1572962.
LF383732 - JP 2014500723-A/191235: Polycomb-Associated Non-Coding RNAs.
LF349326 - JP 2014500723-A/156829: Polycomb-Associated Non-Coding RNAs.
JD294201 - Sequence 275225 from Patent EP1572962.
JD179219 - Sequence 160243 from Patent EP1572962.
JD116858 - Sequence 97882 from Patent EP1572962.
JD517426 - Sequence 498450 from Patent EP1572962.
JD514018 - Sequence 495042 from Patent EP1572962.
JD069843 - Sequence 50867 from Patent EP1572962.
JD069844 - Sequence 50868 from Patent EP1572962.
JD237101 - Sequence 218125 from Patent EP1572962.
JD415176 - Sequence 396200 from Patent EP1572962.
JD072231 - Sequence 53255 from Patent EP1572962.
JD487955 - Sequence 468979 from Patent EP1572962.
JD095378 - Sequence 76402 from Patent EP1572962.
JD429893 - Sequence 410917 from Patent EP1572962.
JD511291 - Sequence 492315 from Patent EP1572962.
JD194334 - Sequence 175358 from Patent EP1572962.
JD401518 - Sequence 382542 from Patent EP1572962.
JD401519 - Sequence 382543 from Patent EP1572962.
JD443740 - Sequence 424764 from Patent EP1572962.
JD071124 - Sequence 52148 from Patent EP1572962.
JD194335 - Sequence 175359 from Patent EP1572962.
JD401521 - Sequence 382545 from Patent EP1572962.
JD424988 - Sequence 406012 from Patent EP1572962.
JD112365 - Sequence 93389 from Patent EP1572962.
JD222872 - Sequence 203896 from Patent EP1572962.
JD497686 - Sequence 478710 from Patent EP1572962.
JD542602 - Sequence 523626 from Patent EP1572962.
JD412887 - Sequence 393911 from Patent EP1572962.
JD430971 - Sequence 411995 from Patent EP1572962.
JD266436 - Sequence 247460 from Patent EP1572962.
JD498177 - Sequence 479201 from Patent EP1572962.
JD112330 - Sequence 93354 from Patent EP1572962.
JD144616 - Sequence 125640 from Patent EP1572962.
JD425625 - Sequence 406649 from Patent EP1572962.
JD188824 - Sequence 169848 from Patent EP1572962.
JD282478 - Sequence 263502 from Patent EP1572962.
JD481439 - Sequence 462463 from Patent EP1572962.
JD243194 - Sequence 224218 from Patent EP1572962.
JD079520 - Sequence 60544 from Patent EP1572962.
JD168550 - Sequence 149574 from Patent EP1572962.
JD179151 - Sequence 160175 from Patent EP1572962.
JD074930 - Sequence 55954 from Patent EP1572962.
JD278828 - Sequence 259852 from Patent EP1572962.
JD472233 - Sequence 453257 from Patent EP1572962.
JD217350 - Sequence 198374 from Patent EP1572962.
JD175904 - Sequence 156928 from Patent EP1572962.
JD332337 - Sequence 313361 from Patent EP1572962.
JD488563 - Sequence 469587 from Patent EP1572962.
JD542079 - Sequence 523103 from Patent EP1572962.
JD181048 - Sequence 162072 from Patent EP1572962.
JD346474 - Sequence 327498 from Patent EP1572962.
JD249892 - Sequence 230916 from Patent EP1572962.
JD478595 - Sequence 459619 from Patent EP1572962.
JD463843 - Sequence 444867 from Patent EP1572962.
JD148331 - Sequence 129355 from Patent EP1572962.
JD249893 - Sequence 230917 from Patent EP1572962.
JD112085 - Sequence 93109 from Patent EP1572962.
JD488574 - Sequence 469598 from Patent EP1572962.
JD430480 - Sequence 411504 from Patent EP1572962.
JD557539 - Sequence 538563 from Patent EP1572962.
JD557540 - Sequence 538564 from Patent EP1572962.
JD529714 - Sequence 510738 from Patent EP1572962.
JD529715 - Sequence 510739 from Patent EP1572962.
JD529716 - Sequence 510740 from Patent EP1572962.
JD169946 - Sequence 150970 from Patent EP1572962.
JD434926 - Sequence 415950 from Patent EP1572962.
JD169947 - Sequence 150971 from Patent EP1572962.
JD434927 - Sequence 415951 from Patent EP1572962.
JD434928 - Sequence 415952 from Patent EP1572962.
JD434929 - Sequence 415953 from Patent EP1572962.
JD306646 - Sequence 287670 from Patent EP1572962.
JD307095 - Sequence 288119 from Patent EP1572962.
JD307096 - Sequence 288120 from Patent EP1572962.
JD307097 - Sequence 288121 from Patent EP1572962.
JD322976 - Sequence 304000 from Patent EP1572962.
JD400614 - Sequence 381638 from Patent EP1572962.
JD401649 - Sequence 382673 from Patent EP1572962.
JD401650 - Sequence 382674 from Patent EP1572962.
JD400615 - Sequence 381639 from Patent EP1572962.
JD401653 - Sequence 382677 from Patent EP1572962.
JD425087 - Sequence 406111 from Patent EP1572962.
JD395434 - Sequence 376458 from Patent EP1572962.
JD395435 - Sequence 376459 from Patent EP1572962.
JD395436 - Sequence 376460 from Patent EP1572962.
JD102042 - Sequence 83066 from Patent EP1572962.
JD432481 - Sequence 413505 from Patent EP1572962.
JD180209 - Sequence 161233 from Patent EP1572962.
JD420942 - Sequence 401966 from Patent EP1572962.
JD443382 - Sequence 424406 from Patent EP1572962.
JD366506 - Sequence 347530 from Patent EP1572962.
JD366503 - Sequence 347527 from Patent EP1572962.
JD366504 - Sequence 347528 from Patent EP1572962.
JD366505 - Sequence 347529 from Patent EP1572962.
JD332085 - Sequence 313109 from Patent EP1572962.
JD517681 - Sequence 498705 from Patent EP1572962.
JD517682 - Sequence 498706 from Patent EP1572962.
JD039920 - Sequence 20944 from Patent EP1572962.
MA584882 - JP 2018138019-A/156808: Polycomb-Associated Non-Coding RNAs.
MA584883 - JP 2018138019-A/156809: Polycomb-Associated Non-Coding RNAs.
MA584887 - JP 2018138019-A/156813: Polycomb-Associated Non-Coding RNAs.
MA584888 - JP 2018138019-A/156814: Polycomb-Associated Non-Coding RNAs.
MA584889 - JP 2018138019-A/156815: Polycomb-Associated Non-Coding RNAs.
MA584892 - JP 2018138019-A/156818: Polycomb-Associated Non-Coding RNAs.
MA584895 - JP 2018138019-A/156821: Polycomb-Associated Non-Coding RNAs.
MA584896 - JP 2018138019-A/156822: Polycomb-Associated Non-Coding RNAs.
MA584897 - JP 2018138019-A/156823: Polycomb-Associated Non-Coding RNAs.
MA584900 - JP 2018138019-A/156826: Polycomb-Associated Non-Coding RNAs.
MA584901 - JP 2018138019-A/156827: Polycomb-Associated Non-Coding RNAs.
MA584902 - JP 2018138019-A/156828: Polycomb-Associated Non-Coding RNAs.
MA619309 - JP 2018138019-A/191235: Polycomb-Associated Non-Coding RNAs.
MA584903 - JP 2018138019-A/156829: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P40818 (Reactome details) participates in the following event(s):

R-HSA-1358791 Phosphorylation of USP8 by P-AKT
R-HSA-1358797 Ubiquitinated RNF41 binds P-USP8
R-HSA-1358795 Deubiquitination of RNF41 by P-USP8
R-HSA-5690196 USP8 deubiquitinates RNF128
R-HSA-6782628 USP8 deubiquitinates STAM2:HGS
R-HSA-4641236 USP8 deubiquitinates FZD to potentiate WNT signaling
R-HSA-8875443 USP8 deubiquitinates LRIG1
R-HSA-1358803 Downregulation of ERBB2:ERBB3 signaling
R-HSA-5689880 Ub-specific processing proteases
R-HSA-8863795 Downregulation of ERBB2 signaling
R-HSA-4641263 Regulation of FZD by ubiquitination
R-HSA-6807004 Negative regulation of MET activity
R-HSA-5688426 Deubiquitination
R-HSA-1227986 Signaling by ERBB2
R-HSA-201681 TCF dependent signaling in response to WNT
R-HSA-6806834 Signaling by MET
R-HSA-597592 Post-translational protein modification
R-HSA-9006934 Signaling by Receptor Tyrosine Kinases
R-HSA-195721 Signaling by WNT
R-HSA-392499 Metabolism of proteins
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: B4DKA8, ENST00000307179.1, ENST00000307179.2, ENST00000307179.3, ENST00000307179.4, ENST00000307179.5, ENST00000307179.6, ENST00000307179.7, ENST00000307179.8, KIAA0055, NM_005154, P40818, Q2TB31, Q7Z3U2, Q86VA0, Q8IWI7, UBP8_HUMAN, UBPY, uc317nzy.1, uc317nzy.2, USP8
UCSC ID: ENST00000307179.9_4
RefSeq Accession: NM_005154.5
Protein: P40818 (aka UBP8_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene USP8:
hsp (Hereditary Spastic Paraplegia Overview)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.