Human Gene VASP (ENST00000245932.11_4) from GENCODE V47lift37
  Description: vasodilator stimulated phosphoprotein (from RefSeq NM_003370.4)
Gencode Transcript: ENST00000245932.11_4
Gencode Gene: ENSG00000125753.15_11
Transcript (Including UTRs)
   Position: hg19 chr19:46,010,737-46,030,241 Size: 19,505 Total Exon Count: 13 Strand: +
Coding Region
   Position: hg19 chr19:46,011,030-46,029,435 Size: 18,406 Coding Exon Count: 13 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:46,010,737-46,030,241)mRNA (may differ from genome)Protein (380 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: VASP_HUMAN
DESCRIPTION: RecName: Full=Vasodilator-stimulated phosphoprotein; Short=VASP;
FUNCTION: Ena/VASP proteins are actin-associated proteins involved in a range of processes dependent on cytoskeleton remodeling and cell polarity such as axon guidance, lamellipodial and filopodial dynamics, platelet activation and cell migration. VASP promotes actin filament elongation. It protects the barbed end of growing actin filaments against capping and increases the rate of actin polymerization in the presence of capping protein. VASP stimulates actin filament elongation by promoting the transfer of profilin- bound actin monomers onto the barbed end of growing actin filaments. Plays a role in actin-based mobility of Listeria monocytogenes in host cells. Regulates actin dynamics in platelets and plays an important role in regulating platelet aggregation.
SUBUNIT: Homotetramer. Interacts with PFN1, PFN2, LPP, ACTN1 and ACTG1. Interacts, via the EVH1 domain, with the Pro-rich regions of ZYX. This interaction is important for targeting to focal adhesions and the formation of actin-rich structures at the apical surface of cells. Interacts, via the EVH1 domain, with the Pro- rich domain of Listeria monocytogenes actA. Interacts with APBB1IP. Interacts, via the Pro-rich domain, with the C-terminal SH3 domain of DNMBP (By similarity).
INTERACTION: P22736:NR4A1; NbExp=2; IntAct=EBI-748201, EBI-721550; Q15418:RPS6KA1; NbExp=4; IntAct=EBI-748201, EBI-963034; P12003:VCL (xeno); NbExp=2; IntAct=EBI-748201, EBI-1039563;
SUBCELLULAR LOCATION: Cytoplasm. Cytoplasm, cytoskeleton. Cell junction, focal adhesion. Cell projection, lamellipodium membrane. Cell projection, filopodium membrane. Note=Targeted to stress fibers and focal adhesions through interaction with a number of proteins including MRL family members. Localizes to the plasma membrane in protruding lamellipodia and filopodial tips. Stimulation by thrombin or PMA, also translocates VASP to focal adhesions. Localized along the sides of actin filaments throughout the peripheral cytoplasm under basal conditions.
TISSUE SPECIFICITY: Highly expressed in platelets.
DOMAIN: The EVH2 domain is comprised of 3 regions. Block A is a thymosin-like domain required for G-actin binding. The KLKR motif within this block is essential for the G-actin binding and for actin polymerization. Block B is required for F-actin binding and subcellular location, and Block C for tetramerization.
DOMAIN: The WH1 domain mediates interaction with XIRP1.
PTM: Major substrate for cAMP-dependent (PKA) and cGMP-dependent protein kinase (PKG) in platelets. The preferred site for PKA is Ser-157, the preferred site for PKG/PRKG1, Ser-239. In ADP- activated platelets, phosphorylation by PKA or PKG on Ser-157 leads to fibrinogen receptor inhibition. Phosphorylation on Thr- 278 requires prior phosphorylation on Ser-157 and Ser-239. In response to phorbol ester (PMA) stimulation, phosphorylated by PKC/PRKCA. In response to thrombin, phosphorylated by both PKC and ROCK1. Phosphorylation at Thr-278 by AMPK does not require prior phosphorylation at Ser-157 or Ser-239. Phosphorylation modulates F-actin binding, actin filament elongation and platelet activation. Phosphorylation at Ser-322 by AMPK also alters actin filament binding. Carbon monoxide (CO) promotes phosphorylation at Ser-157, while nitric oxide (NO) promotes phosphorylation at Ser- 157, but also at Ser-239. Response to NO and CO is blunted in platelets from diabetic patients, and VASP is not phosphorylated efficiently at Ser-157 and Ser-239.
MISCELLANEOUS: VASP phosphorylation is used to monitor the effect of so-called antiplatelet drugs that reduce platelet reactivity and are used to prevent stent thrombosis, strokes and heart attacks in patients at risk for these problems.
SIMILARITY: Belongs to the Ena/VASP family.
SIMILARITY: Contains 1 WH1 domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: VASP
Diseases sorted by gene-association score: clopidogrel resistance (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D005996 Nitroglycerin
  • C055656 8-((4-chlorophenyl)thio)cyclic-3',5'-GMP
  • D003993 Dibutyl Phthalate
  • D019821 Simvastatin
  • C052753 nebivolol
  • C059514 resveratrol
  • C439285 (5-fluoro-2-methyl-1-(4-pyridyl)methylene-3-(N-benzyl)-indene)-acetamide hydrochloride
  • C095284 1H-(1,2,4)oxadiazolo(4,3-a)quinoxalin-1-one
  • C071644 5,6-dichloro-1-beta-D-ribofuranosylbenzimidazole-3',5'-monophosphorothioate
  • D000079 Acetaldehyde
          more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 207.91 RPKM in Whole Blood
Total median expression: 1524.41 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -138.20293-0.472 Picture PostScript Text
3' UTR -297.60806-0.369 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000697 - EVH1
IPR011993 - PH_like_dom
IPR017354 - Vasodilator_phosphoprotein
IPR014885 - VASP_tetra

Pfam Domains:
PF00568 - WH1 domain
PF08776 - VASP tetramerisation domain

SCOP Domains:
50729 - PH domain-like
118370 - Vasodilator-stimulated phosphoprotein, VASP, tetramerisation domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1EGX - NMR MuPIT 1JNG - Model 1USD - X-ray 1USE - X-ray 2PAV - X-ray MuPIT 2PBD - X-ray MuPIT 3CHW - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P50552
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003779 actin binding
GO:0005515 protein binding
GO:0005522 profilin binding
GO:0017124 SH3 domain binding
GO:0045296 cadherin binding

Biological Process:
GO:0001843 neural tube closure
GO:0007411 axon guidance
GO:0008154 actin polymerization or depolymerization
GO:0030036 actin cytoskeleton organization
GO:0030838 positive regulation of actin filament polymerization
GO:0034329 cell junction assembly
GO:0051289 protein homotetramerization

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005886 plasma membrane
GO:0005923 bicellular tight junction
GO:0005925 focal adhesion
GO:0015629 actin cytoskeleton
GO:0016020 membrane
GO:0030027 lamellipodium
GO:0030054 cell junction
GO:0030175 filopodium
GO:0031258 lamellipodium membrane
GO:0031527 filopodium membrane
GO:0042995 cell projection
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  AK314812 - Homo sapiens cDNA, FLJ95688, Homo sapiens vasodilator-stimulated phosphoprotein (VASP), mRNA.
BC026019 - Homo sapiens vasodilator-stimulated phosphoprotein, mRNA (cDNA clone MGC:15643 IMAGE:3345963), complete cds.
JD021203 - Sequence 2227 from Patent EP1572962.
BC038224 - Homo sapiens vasodilator-stimulated phosphoprotein, mRNA (cDNA clone MGC:40541 IMAGE:5210128), complete cds.
JD031162 - Sequence 12186 from Patent EP1572962.
Z46389 - Homo sapiens encoding vasodilator-stimulated phosphoprotein (VASP).
JD020591 - Sequence 1615 from Patent EP1572962.
JD053201 - Sequence 34225 from Patent EP1572962.
JD458842 - Sequence 439866 from Patent EP1572962.
JD029737 - Sequence 10761 from Patent EP1572962.
JD389686 - Sequence 370710 from Patent EP1572962.
JD391523 - Sequence 372547 from Patent EP1572962.
JD404395 - Sequence 385419 from Patent EP1572962.
CU693102 - Synthetic construct Homo sapiens gateway clone IMAGE:100023033 5' read VASP mRNA.
KJ901821 - Synthetic construct Homo sapiens clone ccsbBroadEn_11215 VASP gene, encodes complete protein.
CU691544 - Synthetic construct Homo sapiens gateway clone IMAGE:100019156 5' read VASP mRNA.
AB590943 - Synthetic construct DNA, clone: pFN21AE1860, Homo sapiens VASP gene for vasodilator-stimulated phosphoprotein, without stop codon, in Flexi system.
KU178381 - Homo sapiens vasodilator-stimulated phosphoprotein isoform 1 (VASP) mRNA, partial cds.
KU178382 - Homo sapiens vasodilator-stimulated phosphoprotein isoform 2 (VASP) mRNA, partial cds, alternatively spliced.
KU178383 - Homo sapiens vasodilator-stimulated phosphoprotein isoform 3 (VASP) mRNA, partial cds, alternatively spliced.
KU178384 - Homo sapiens vasodilator-stimulated phosphoprotein isoform 4 (VASP) mRNA, partial cds, alternatively spliced.
KU178385 - Homo sapiens vasodilator-stimulated phosphoprotein isoform 5 (VASP) mRNA, complete cds, alternatively spliced.
KJ904586 - Synthetic construct Homo sapiens clone ccsbBroadEn_13980 VASP-like gene, encodes complete protein.
LF207543 - JP 2014500723-A/15046: Polycomb-Associated Non-Coding RNAs.
JD468841 - Sequence 449865 from Patent EP1572962.
JD525604 - Sequence 506628 from Patent EP1572962.
JD223745 - Sequence 204769 from Patent EP1572962.
JD519715 - Sequence 500739 from Patent EP1572962.
JD124806 - Sequence 105830 from Patent EP1572962.
JD554846 - Sequence 535870 from Patent EP1572962.
JD054304 - Sequence 35328 from Patent EP1572962.
JD121405 - Sequence 102429 from Patent EP1572962.
JD372571 - Sequence 353595 from Patent EP1572962.
JD501652 - Sequence 482676 from Patent EP1572962.
JD202812 - Sequence 183836 from Patent EP1572962.
JD355996 - Sequence 337020 from Patent EP1572962.
MA443120 - JP 2018138019-A/15046: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P50552 (Reactome details) participates in the following event(s):

R-HSA-446364 Migfilin interacts with VASP
R-HSA-376140 Ena/VASP proteins bind ROBO1:SLIT2 complex
R-HSA-430201 p-SLP-76:ADAP binds Ena/VASP
R-HSA-428534 Recruitment of Profilin by Ena/VASP proteins
R-HSA-446353 Cell-extracellular matrix interactions
R-HSA-376176 Signaling by ROBO receptors
R-HSA-202433 Generation of second messenger molecules
R-HSA-446728 Cell junction organization
R-HSA-422475 Axon guidance
R-HSA-202403 TCR signaling
R-HSA-1500931 Cell-Cell communication
R-HSA-1266738 Developmental Biology
R-HSA-1280218 Adaptive Immune System
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: B2RBT9, ENST00000245932.1, ENST00000245932.10, ENST00000245932.2, ENST00000245932.3, ENST00000245932.4, ENST00000245932.5, ENST00000245932.6, ENST00000245932.7, ENST00000245932.8, ENST00000245932.9, NM_003370, P50552, Q6PIZ1, Q93035, uc317erx.1, uc317erx.2, VASP_HUMAN
UCSC ID: ENST00000245932.11_4
RefSeq Accession: NM_003370.4
Protein: P50552 (aka VASP_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.