Human Gene VSIG8 (ENST00000368100.1_7) from GENCODE V47lift37
  Description: V-set and immunoglobulin domain containing 8 (from RefSeq NM_001013661.1)
Gencode Transcript: ENST00000368100.1_7
Gencode Gene: ENSG00000243284.1_12
Transcript (Including UTRs)
   Position: hg19 chr1:159,824,106-159,832,447 Size: 8,342 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr1:159,824,543-159,832,311 Size: 7,769 Coding Exon Count: 7 

Page IndexSequence and LinksPrimersGene AllelesRNA-Seq ExpressionMicroarray Expression
RNA StructureOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:159,824,106-159,832,447)mRNA (may differ from genome)Protein (414 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIPubMedUniProtKBWikipediaBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 8.81 RPKM in Skin - Sun Exposed (Lower leg)
Total median expression: 43.48 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -31.82136-0.234 Picture PostScript Text
3' UTR -230.00437-0.526 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Descriptions from all associated GenBank mRNAs
  AK096506 - Homo sapiens cDNA FLJ39187 fis, clone OCBBF2004533.
BC132893 - Homo sapiens V-set and immunoglobulin domain containing 8, mRNA (cDNA clone MGC:164524 IMAGE:40146915), complete cds.
BC132895 - Homo sapiens V-set and immunoglobulin domain containing 8, mRNA (cDNA clone MGC:164526 IMAGE:40146917), complete cds.
HQ258612 - Synthetic construct Homo sapiens clone IMAGE:100073160 V-set and immunoglobulin domain containing 8 (VSIG8) gene, encodes complete protein.
KJ896225 - Synthetic construct Homo sapiens clone ccsbBroadEn_05619 VSIG8 gene, encodes complete protein.
JD210808 - Sequence 191832 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: C1orf204, NM_001013661, P0DPA2, Q5VU13, Q5VU14, uc318gly.1, uc318gly.2, VSIG8 , VSIG8_HUMAN
UCSC ID: ENST00000368100.1_7
RefSeq Accession: NM_001013661.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.