Human Gene WDR83 (ENST00000418543.8_4) from GENCODE V47lift37
  Description: WD repeat domain 83, transcript variant 2 (from RefSeq NM_032332.4)
Gencode Transcript: ENST00000418543.8_4
Gencode Gene: ENSG00000123154.12_8
Transcript (Including UTRs)
   Position: hg19 chr19:12,777,621-12,786,646 Size: 9,026 Total Exon Count: 11 Strand: +
Coding Region
   Position: hg19 chr19:12,780,605-12,786,486 Size: 5,882 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:12,777,621-12,786,646)mRNA (may differ from genome)Protein (315 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: WDR83_HUMAN
DESCRIPTION: RecName: Full=WD repeat domain-containing protein 83; AltName: Full=Mitogen-activated protein kinase organizer 1; Short=MAPK organizer 1;
FUNCTION: Molecular scaffold protein for various multimeric protein complexes. Acts as a module in the assembly of a multicomponent scaffold for the ERK pathway, linking ERK responses to specific agonists. At low concentrations it enhances ERK activation, whereas high concentrations lead to the inhibition of ERK activation. Also involved in response to hypoxia by acting as a negative regulator of HIF1A/HIF-1-alpha via its interaction with EGLN3/PHD3. May promote degradation of HIF1A. May act by recruiting signaling complexes to a specific upstream activator (By similarity). May also be involved in pre-mRNA splicing.
SUBUNIT: Interacts with EGLN3/PHD3. Interacts with ERK signaling proteins MAP2K1/MEK1, MAP2K2/MEK2, LAMTOR3, ARAF/Raf-1, MAPK1/ERK2 and MAPK3/ERK1 (By similarity). Identified in the spliceosome C complex.
SUBCELLULAR LOCATION: Cytoplasm (By similarity). Nucleus (By similarity). Note=Predominantly cytoplasmic (By similarity). Partially nuclear (By similarity).
SIMILARITY: Belongs to the WD repeat MORG1 family.
SIMILARITY: Contains 7 WD repeats.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 10.49 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 280.02 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -118.10342-0.345 Picture PostScript Text
3' UTR -39.20160-0.245 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR020472 - G-protein_beta_WD-40_rep
IPR015943 - WD40/YVTN_repeat-like_dom
IPR001680 - WD40_repeat
IPR019775 - WD40_repeat_CS
IPR017986 - WD40_repeat_dom

Pfam Domains:
PF00400 - WD domain, G-beta repeat

SCOP Domains:
50952 - Soluble quinoprotein glucose dehydrogenase
50960 - TolB, C-terminal domain
63825 - YWTD domain
63829 - Calcium-dependent phosphotriesterase
69304 - Tricorn protease N-terminal domain
101898 - NHL repeat
50965 - Galactose oxidase, central domain
75011 - 3-carboxy-cis,cis-mucoante lactonizing enzyme
101908 - Putative isomerase YbhE
117289 - Nucleoporin domain
50969 - YVTN repeat-like/Quinoprotein amine dehydrogenase
50974 - Nitrous oxide reductase, N-terminal domain
50978 - WD40 repeat-like
50993 - Peptidase/esterase 'gauge' domain
69322 - Tricorn protease domain 2
50998 - Quinoprotein alcohol dehydrogenase-like
51004 - C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
82171 - DPP6 N-terminal domain-like

ModBase Predicted Comparative 3D Structure on Q9BRX9
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
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 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0000165 MAPK cascade
GO:0000375 RNA splicing, via transesterification reactions
GO:0000398 mRNA splicing, via spliceosome
GO:0006397 mRNA processing
GO:0008380 RNA splicing

Cellular Component:
GO:0005634 nucleus
GO:0005681 spliceosomal complex
GO:0005737 cytoplasm
GO:0010008 endosome membrane
GO:0071013 catalytic step 2 spliceosome


-  Descriptions from all associated GenBank mRNAs
  LF384416 - JP 2014500723-A/191919: Polycomb-Associated Non-Coding RNAs.
AK074525 - Homo sapiens cDNA FLJ90044 fis, clone HEMBA1002195, weakly similar to VEGETATIBLE INCOMPATIBILITY PROTEIN HET-E-1.
AK314164 - Homo sapiens cDNA, FLJ94874.
LF208197 - JP 2014500723-A/15700: Polycomb-Associated Non-Coding RNAs.
CU687515 - Synthetic construct Homo sapiens gateway clone IMAGE:100021555 3' read C19orf56 mRNA.
AK223195 - Homo sapiens mRNA for mitogen-activated protein kinase organizer 1 variant, clone: REC00723.
BC005870 - Homo sapiens mitogen-activated protein kinase organizer 1, mRNA (cDNA clone MGC:4238 IMAGE:2961616), complete cds.
JD469008 - Sequence 450032 from Patent EP1572962.
JD340538 - Sequence 321562 from Patent EP1572962.
CU675171 - Synthetic construct Homo sapiens gateway clone IMAGE:100018863 5' read MORG1 mRNA.
HQ447831 - Synthetic construct Homo sapiens clone IMAGE:100071174; CCSB004734_02 mitogen-activated protein kinase organizer 1 (MORG1) gene, encodes complete protein.
KJ894967 - Synthetic construct Homo sapiens clone ccsbBroadEn_04361 WDR83 gene, encodes complete protein.
JD371149 - Sequence 352173 from Patent EP1572962.
JD088335 - Sequence 69359 from Patent EP1572962.
JD470283 - Sequence 451307 from Patent EP1572962.
JD066165 - Sequence 47189 from Patent EP1572962.
MA619993 - JP 2018138019-A/191919: Polycomb-Associated Non-Coding RNAs.
MA443774 - JP 2018138019-A/15700: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9BRX9 (Reactome details) participates in the following event(s):

R-HSA-5674132 WDR83:LAMTOR2:LAMTOR3 binds MAPK components
R-HSA-5674135 MAP2K and MAPK activation
R-HSA-5673001 RAF/MAP kinase cascade
R-HSA-5684996 MAPK1/MAPK3 signaling
R-HSA-5683057 MAPK family signaling cascades
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: B2RAF1, ENST00000418543.1, ENST00000418543.2, ENST00000418543.3, ENST00000418543.4, ENST00000418543.5, ENST00000418543.6, ENST00000418543.7, MORG1, NM_032332, Q53FT6, Q9BRX9, uc319odg.1, uc319odg.2, WDR83_HUMAN
UCSC ID: ENST00000418543.8_4
RefSeq Accession: NM_001099737.3
Protein: Q9BRX9 (aka WDR83_HUMAN)

-  Gene Model Information
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-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.