Human Gene WRAP53 (ENST00000396463.7_11) from GENCODE V47lift37
  Description: WD repeat containing antisense to TP53, transcript variant 1 (from RefSeq NM_018081.2)
Gencode Transcript: ENST00000396463.7_11
Gencode Gene: ENSG00000141499.18_14
Transcript (Including UTRs)
   Position: hg19 chr17:7,591,795-7,606,820 Size: 15,026 Total Exon Count: 11 Strand: +
Coding Region
   Position: hg19 chr17:7,591,967-7,606,804 Size: 14,838 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:7,591,795-7,606,820)mRNA (may differ from genome)Protein (548 aa)
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UniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: WAP53_HUMAN
DESCRIPTION: RecName: Full=Telomerase Cajal body protein 1; AltName: Full=WD repeat-containing protein 79; AltName: Full=WD40 repeat-containing protein encoding RNA antisense to p53;
FUNCTION: Essential component of the telomerase holoenzyme complex, a ribonucleoprotein complex essential for the replication of chromosome termini that elongates telomeres in most eukaryotes. In the telomerase holoenzyme complex, it controls telomerase localization to Cajal body. Required for delivery of TERC to telomeres during S phase and for telomerase activity. Binds small Cajal body RNAs (scaRNAs). The mRNA encoding this protein plays a critical role in the regulation of p53 expression at the post- transcriptional level; it is involved both in maintaining basal p53 mRNA levels and in p53 induction upon DNA damage.
SUBUNIT: Component of the telomerase holoenzyme complex at least composed of TERT, DKC1, WRAP53/TCAB1, NOP10, NHP2, GAR1, TEP1, EST1A, POT1 and a telomerase RNA template component (TERC).
SUBCELLULAR LOCATION: Nucleus, Cajal body. Cytoplasm.
TISSUE SPECIFICITY: Expressed in all tissues and cell lines examined.
PTM: Phosphorylated upon DNA damage, probably by ATM or ATR.
DISEASE: Defects in WRAP53 are the cause of dyskeratosis congenita autosomal recessive type 3 (DKCB3) [MIM:613988]. A rare multisystem disorder caused by defective telomere maintenance. It is characterized by progressive bone marrow failure, and the clinical triad of reticulated skin hyperpigmentation, nail dystrophy, and mucosal leukoplakia. Common but variable features include premature graying, aplastic anemia, low platelets, osteoporosis, pulmonary fibrosis, and liver fibrosis among others. Early mortality is often associated with bone marrow failure, infections, fatal pulmonary complications, or malignancy.
SIMILARITY: Contains 6 WD repeats.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: WRAP53
Diseases sorted by gene-association score: dyskeratosis congenita, autosomal recessive 3* (1230), dyskeratosis congenita* (222), wrap53-related dyskeratosis congenita* (100), dyskeratosis congenita autosomal recessive (17)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 9.37 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 200.14 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -32.8086-0.381 Picture PostScript Text
3' UTR 0.00160.000 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR015943 - WD40/YVTN_repeat-like_dom
IPR001680 - WD40_repeat
IPR017986 - WD40_repeat_dom

Pfam Domains:
PF00400 - WD domain, G-beta repeat

SCOP Domains:
50952 - Soluble quinoprotein glucose dehydrogenase
50956 - Thermostable phytase (3-phytase)
50960 - TolB, C-terminal domain
63825 - YWTD domain
63829 - Calcium-dependent phosphotriesterase
69304 - Tricorn protease N-terminal domain
101898 - NHL repeat
50965 - Galactose oxidase, central domain
75011 - 3-carboxy-cis,cis-mucoante lactonizing enzyme
101908 - Putative isomerase YbhE
117289 - Nucleoporin domain
50969 - YVTN repeat-like/Quinoprotein amine dehydrogenase
50974 - Nitrous oxide reductase, N-terminal domain
50978 - WD40 repeat-like
50993 - Peptidase/esterase 'gauge' domain
69322 - Tricorn protease domain 2
50998 - Quinoprotein alcohol dehydrogenase-like
51004 - C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
82171 - DPP6 N-terminal domain-like

ModBase Predicted Comparative 3D Structure on Q9BUR4
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
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 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0042802 identical protein binding
GO:0044877 macromolecular complex binding
GO:0051087 chaperone binding
GO:0070034 telomerase RNA binding

Biological Process:
GO:0007004 telomere maintenance via telomerase
GO:0032203 telomere formation via telomerase
GO:0051973 positive regulation of telomerase activity
GO:0090666 scaRNA localization to Cajal body
GO:0090671 telomerase RNA localization to Cajal body
GO:1904851 positive regulation of establishment of protein localization to telomere
GO:1904867 protein localization to Cajal body

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005697 telomerase holoenzyme complex
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0015030 Cajal body
GO:0016604 nuclear body


-  Descriptions from all associated GenBank mRNAs
  DQ431241 - Homo sapiens WD40 protein Wrap53 1G (WRAP53) mRNA, complete cds.
AK056669 - Homo sapiens cDNA FLJ32107 fis, clone OCBBF2001416, highly similar to WD repeat protein 79.
AY766322 - Homo sapiens WRAP53 mRNA, complete cds, alternatively spliced.
AK092370 - Homo sapiens cDNA FLJ35051 fis, clone OCBBF2018206, moderately similar to Mesocricetus auratus guanine nucleotide-binding protein beta 5.
AX747505 - Sequence 1030 from Patent EP1308459.
DQ431240 - Homo sapiens WRAP53beta (WRAP53) mRNA, complete cds.
AK225411 - Homo sapiens mRNA for hypothetical protein LOC55135 variant, clone: HRC08661.
AK001247 - Homo sapiens cDNA FLJ10385 fis, clone NT2RM2002128, weakly similar to PUTATIVE SERINE/THREONINE-PROTEIN KINASE PKWA (EC 2.7.1.-).
AK225273 - Homo sapiens mRNA for hypothetical protein LOC55135 variant, clone: DMC09064.
AK303246 - Homo sapiens cDNA FLJ54772 complete cds, moderately similar to WD repeat protein 79.
BC002336 - Homo sapiens WD repeat containing, antisense to TP53, mRNA (cDNA clone MGC:973 IMAGE:2924101), complete cds.
CU677914 - Synthetic construct Homo sapiens gateway clone IMAGE:100017698 5' read WDR79 mRNA.
KJ894137 - Synthetic construct Homo sapiens clone ccsbBroadEn_03531 WRAP53 gene, encodes complete protein.
KR710121 - Synthetic construct Homo sapiens clone CCSBHm_00009894 WRAP53 (WRAP53) mRNA, encodes complete protein.
AY766323 - Homo sapiens WRAP53 mRNA, exon 1B and partial cds, alternatively spliced.
JD289164 - Sequence 270188 from Patent EP1572962.
JD416444 - Sequence 397468 from Patent EP1572962.
JD130445 - Sequence 111469 from Patent EP1572962.
JD145053 - Sequence 126077 from Patent EP1572962.
DQ571908 - Homo sapiens piRNA piR-32020, complete sequence.
JD343330 - Sequence 324354 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9BUR4 (Reactome details) participates in the following event(s):

R-HSA-390470 Association of CCT/TriC with other substrates during biosynthesis (unknown chaperone)
R-HSA-390471 Association of TriC/CCT with target proteins during biosynthesis
R-HSA-390466 Chaperonin-mediated protein folding
R-HSA-391251 Protein folding
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: B3KPR9, D3DTQ4, ENST00000396463.1, ENST00000396463.2, ENST00000396463.3, ENST00000396463.4, ENST00000396463.5, ENST00000396463.6, NM_018081, Q08ET9, Q9BUR4, Q9NW09, TCAB1 , TCAB1_HUMAN, uc318ygq.1, uc318ygq.2, WDR79 , WRAP53
UCSC ID: ENST00000396463.7_11
RefSeq Accession: NM_001143992.2
Protein: Q9BUR4 (aka WAP53_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene WRAP53:
dkc (Dyskeratosis Congenita and Related Telomere Biology Disorders)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.