Human Gene WRNIP1 (ENST00000380773.9_10) from GENCODE V47lift37
  Description: WRN helicase interacting protein 1, transcript variant 1 (from RefSeq NM_020135.3)
Gencode Transcript: ENST00000380773.9_10
Gencode Gene: ENSG00000124535.16_11
Transcript (Including UTRs)
   Position: hg19 chr6:2,765,627-2,787,186 Size: 21,560 Total Exon Count: 7 Strand: +
Coding Region
   Position: hg19 chr6:2,765,857-2,785,516 Size: 19,660 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:2,765,627-2,787,186)mRNA (may differ from genome)Protein (665 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
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WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: WRIP1_HUMAN
DESCRIPTION: RecName: Full=ATPase WRNIP1; AltName: Full=Werner helicase-interacting protein 1;
FUNCTION: Functions as a modulator for initiation or reinitiation events during DNA polymerase delta-mediated DNA synthesis. Has an intrinsic ATPase activity that functions as a sensor of DNA damage or of arrested replication forks and regulates the extent of DNA synthesis.
SUBUNIT: Homooligomer; most likely an octamer. Interacts with POLD1, POLD2 and POLD4. Interacts with the N-terminal domain of WRN. Interacts (via UBZ-type zinc finger) with polyubiquitin.
INTERACTION: O95786:DDX58; NbExp=2; IntAct=EBI-2513471, EBI-995350; Q9H0E2:TOLLIP; NbExp=2; IntAct=EBI-2513471, EBI-74615;
SUBCELLULAR LOCATION: Nucleus (By similarity). Note=Colocalizes with WRN in granular structures in the nucleus (By similarity).
TISSUE SPECIFICITY: Ubiquitously expressed.
PTM: Sumoylated with SUMO1 and SUMO2/3.
SIMILARITY: Belongs to the AAA ATPase family.
SIMILARITY: Contains 1 UBZ-type zinc finger.
SEQUENCE CAUTION: Sequence=AAF80563.1; Type=Erroneous initiation; Sequence=BAB15383.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: WRNIP1
Diseases sorted by gene-association score: brain compression (2), posterior myocardial infarction (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 21.28 RPKM in Brain - Cerebellar Hemisphere
Total median expression: 598.24 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -133.80230-0.582 Picture PostScript Text
3' UTR -482.301670-0.289 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003593 - AAA+_ATPase
IPR003959 - ATPase_AAA_core
IPR021886 - MgsA_C
IPR006642 - Znf_Rad18_put

Pfam Domains:
PF00004 - ATPase family associated with various cellular activities (AAA)
PF05496 - Holliday junction DNA helicase RuvB P-loop domain
PF05673 - Protein of unknown function (DUF815)
PF07724 - AAA domain (Cdc48 subfamily)
PF07728 - AAA domain (dynein-related subfamily)
PF12002 - MgsA AAA+ ATPase C terminal
PF13173 - AAA domain
PF16193 - AAA C-terminal domain
PF18279 - Werner helicase-interacting protein 1 ubiquitin-binding domain

SCOP Domains:
48019 - post-AAA+ oligomerization domain-like
52540 - P-loop containing nucleoside triphosphate hydrolases
53795 - PEP carboxykinase-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3VHS - X-ray MuPIT 3VHT - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q96S55
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016787 hydrolase activity
GO:0016887 ATPase activity
GO:0042802 identical protein binding
GO:0046872 metal ion binding

Biological Process:
GO:0000731 DNA synthesis involved in DNA repair
GO:0002376 immune system process
GO:0006260 DNA replication
GO:0006281 DNA repair
GO:0006974 cellular response to DNA damage stimulus
GO:0030174 regulation of DNA-dependent DNA replication initiation
GO:0045087 innate immune response

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0016020 membrane
GO:0048471 perinuclear region of cytoplasm
GO:0000784 nuclear chromosome, telomeric region


-  Descriptions from all associated GenBank mRNAs
  LF209745 - JP 2014500723-A/17248: Polycomb-Associated Non-Coding RNAs.
LF209747 - JP 2014500723-A/17250: Polycomb-Associated Non-Coding RNAs.
AK315047 - Homo sapiens cDNA, FLJ95995.
AB056152 - Homo sapiens WHIP mRNA for Werner helicase interacting protein, complete cds.
AK315471 - Homo sapiens cDNA, FLJ96531, Homo sapiens Werner helicase interacting protein 1 (WRNIP1),transcript variant 2, mRNA.
BC018923 - Homo sapiens Werner helicase interacting protein 1, mRNA (cDNA clone MGC:12914 IMAGE:4109718), complete cds.
AK094823 - Homo sapiens cDNA FLJ37504 fis, clone BRAWH2017103, highly similar to ATPase WRNIP1.
AK223593 - Homo sapiens mRNA for Werner helicase interacting protein isoform 1 variant, clone: FCC130H09.
JD484775 - Sequence 465799 from Patent EP1572962.
JD538142 - Sequence 519166 from Patent EP1572962.
JD142373 - Sequence 123397 from Patent EP1572962.
DQ891950 - Synthetic construct clone IMAGE:100004580; FLH181701.01X; RZPDo839G03136D Werner helicase interacting protein 1 (WRNIP1) gene, encodes complete protein.
DQ895136 - Synthetic construct Homo sapiens clone IMAGE:100009596; FLH181697.01L; RZPDo839G03135D Werner helicase interacting protein 1 (WRNIP1) gene, encodes complete protein.
AB209723 - Homo sapiens mRNA for Werner helicase interacting protein isoform 1 variant protein.
LF331413 - JP 2014500723-A/138916: Polycomb-Associated Non-Coding RNAs.
LF331415 - JP 2014500723-A/138918: Polycomb-Associated Non-Coding RNAs.
AF218313 - Homo sapiens putative helicase RUVBL mRNA, complete cds.
AK026179 - Homo sapiens cDNA: FLJ22526 fis, clone HRC12794.
LF331416 - JP 2014500723-A/138919: Polycomb-Associated Non-Coding RNAs.
LF331421 - JP 2014500723-A/138924: Polycomb-Associated Non-Coding RNAs.
U56249 - Human HeLa mRNA isolated as a false positive during two-hybrid-screening.
JD243041 - Sequence 224065 from Patent EP1572962.
MA566990 - JP 2018138019-A/138916: Polycomb-Associated Non-Coding RNAs.
MA566992 - JP 2018138019-A/138918: Polycomb-Associated Non-Coding RNAs.
MA566993 - JP 2018138019-A/138919: Polycomb-Associated Non-Coding RNAs.
MA566998 - JP 2018138019-A/138924: Polycomb-Associated Non-Coding RNAs.
MA445322 - JP 2018138019-A/17248: Polycomb-Associated Non-Coding RNAs.
MA445324 - JP 2018138019-A/17250: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: B2RDB0, ENST00000380773.1, ENST00000380773.2, ENST00000380773.3, ENST00000380773.4, ENST00000380773.5, ENST00000380773.6, ENST00000380773.7, ENST00000380773.8, NM_020135, Q53EP6, Q59ET8, Q5W0E2, Q5W0E4, Q8WV26, Q96S55, Q9H681, Q9NRJ6, uc318pvl.1, uc318pvl.2, WHIP , WRIP1_HUMAN, WRNIP1
UCSC ID: ENST00000380773.9_10
RefSeq Accession: NM_020135.3
Protein: Q96S55 (aka WRIP1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.