Human Gene WWOX (ENST00000566780.6_4) from GENCODE V47lift37
  Description: WW domain containing oxidoreductase, transcript variant 1 (from RefSeq NM_016373.4)
Gencode Transcript: ENST00000566780.6_4
Gencode Gene: ENSG00000186153.19_10
Transcript (Including UTRs)
   Position: hg19 chr16:78,133,551-79,246,564 Size: 1,113,014 Total Exon Count: 9 Strand: +
Coding Region
   Position: hg19 chr16:78,133,676-79,245,693 Size: 1,112,018 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:78,133,551-79,246,564)mRNA (may differ from genome)Protein (414 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: WWOX_HUMAN
DESCRIPTION: RecName: Full=WW domain-containing oxidoreductase; EC=1.1.1.-; AltName: Full=Fragile site FRA16D oxidoreductase;
FUNCTION: Putative oxidoreductase. Acts as a tumor suppressor and plays a role in apoptosis. Required for normal bone development (By similarity). May function synergistically with p53/TP53 to control genotoxic stress-induced cell death. Plays a role in TGFB1 signaling and TGFB1-mediated cell death. May also play a role in tumor necrosis factor (TNF)-mediated cell death. Inhibits Wnt signaling, probably by sequestering DVL2 in the cytoplasm.
SUBUNIT: Interacts with TP53, p73/TP73 and MAPK8. Interacts with MAPT/TAU, RUNX2 and HYAL2 (By similarity). Forms a ternary complex with TP53 and MDM2. Interacts with ERBB4, LITAF and WBP1. Interacts with DVL1, DVL2 and DVL3. May interact with COTE1/C1orf2 and SCOTIN. Interacts with TNK2. Interacts with TMEM207.
INTERACTION: Q61527:Erbb4 (xeno); NbExp=3; IntAct=EBI-4320739, EBI-4398741;
SUBCELLULAR LOCATION: Cytoplasm. Nucleus. Mitochondrion. Golgi apparatus. Note=Partially localizes to the mitochondria. Translocates to the nucleus upon genotoxic stress or TNF stimulation (By similarity). Translocates to the nucleus in response to TGFB1. Isoform 5 and isoform 6 may localize in the nucleus.
TISSUE SPECIFICITY: Widely expressed. Strongly expressed in testis, prostate, and ovary. Overexpressed in cancer cell lines. Isoform 5 and isoform 6 may only be expressed in tumor cell lines.
DOMAIN: The WW 1 domain mediates interaction with TP53, and probably TP73, TFAP2C, LITAF and WBP1.
PTM: Phosphorylated upon genotoxic stress. Phosphorylation of Tyr- 33 regulates interaction with TP53, TP73 and MAPK8. May also regulate proapoptotic activity. Phosphorylation by TNK2 is associated with polyubiquitination and degradation.
PTM: Ubiquitinated when phosphorylated by TNK2, leading to its degradation.
DISEASE: Note=Defects in WWOX may be involved in several cancer types. The gene spans the second most common chromosomal fragile site (FRA16D) which is frequently altered in cancers. Alteration of the expression and expression of some isoforms is associated with cancers. However, it is still unclear if alteration of WWOX is directly implicated in cancerogenesis or if it corresponds to a secondary effect.
DISEASE: Defects in WWOX may be a cause of esophageal cancer (ESCR) [MIM:133239].
SIMILARITY: Belongs to the short-chain dehydrogenases/reductases (SDR) family.
SIMILARITY: Contains 2 WW domains.
SEQUENCE CAUTION: Sequence=AAP94227.1; Type=Frameshift; Positions=362;
WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and Haematology; URL="http://atlasgeneticsoncology.org/Genes/WWOXID508ch16q23.html";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: WWOX
Diseases sorted by gene-association score: spinocerebellar ataxia, autosomal recessive 12* (1680), epileptic encephalopathy, early infantile, 28* (1330), esophageal cancer* (681), 46,xy partial gonadal dysgenesis* (350), epileptic encephalopathy, early infantile, 1* (283), undetermined early-onset epileptic encephalopathy* (143), west syndrome* (133), gastric cardia adenocarcinoma (26), esophageal adenosquamous carcinoma (16), esophagus sarcoma (16), esophageal adenoid cystic carcinoma (15), mucoepidermoid esophageal carcinoma (13), spinocerebellar ataxia 12 (12), colon squamous cell carcinoma (11), gastric cardia carcinoma (11), squamous papillomatosis (10), squamous cell carcinoma (10), esophageal disease (9), alveolar periostitis (8), esophagus squamous cell carcinoma (7), gastrointestinal system cancer (7), jejunal adenocarcinoma (6), esophageal basaloid squamous cell carcinoma (5), lymph node cancer (5), ataxia (5), esophagus adenocarcinoma (5), norwegian scabies (5), squamous cell papilloma (4), tonsil cancer (4), breast cancer (3), cell type cancer (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 5.19 RPKM in Thyroid
Total median expression: 122.08 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -56.50125-0.452 Picture PostScript Text
3' UTR -251.40871-0.289 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002198 - DH_sc/Rdtase_SDR
IPR002347 - Glc/ribitol_DH
IPR016040 - NAD(P)-bd_dom
IPR001202 - WW_Rsp5_WWP

Pfam Domains:
PF00106 - short chain dehydrogenase
PF00397 - WW domain
PF08659 - KR domain
PF13561 - Enoyl-(Acyl carrier protein) reductase

SCOP Domains:
51045 - WW domain
51735 - NAD(P)-binding Rossmann-fold domains
51905 - FAD/NAD(P)-binding domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1WMV - NMR MuPIT


ModBase Predicted Comparative 3D Structure on Q9NZC7
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGD  WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001105 RNA polymerase II transcription coactivator activity
GO:0005515 protein binding
GO:0016491 oxidoreductase activity
GO:0019899 enzyme binding
GO:0046983 protein dimerization activity
GO:0048037 cofactor binding
GO:0050662 coenzyme binding

Biological Process:
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0001649 osteoblast differentiation
GO:0006366 transcription from RNA polymerase II promoter
GO:0006915 apoptotic process
GO:0008202 steroid metabolic process
GO:0016055 Wnt signaling pathway
GO:0030178 negative regulation of Wnt signaling pathway
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0048705 skeletal system morphogenesis
GO:0055114 oxidation-reduction process
GO:0071560 cellular response to transforming growth factor beta stimulus
GO:0072332 intrinsic apoptotic signaling pathway by p53 class mediator
GO:0097191 extrinsic apoptotic signaling pathway
GO:2001238 positive regulation of extrinsic apoptotic signaling pathway
GO:2001241 positive regulation of extrinsic apoptotic signaling pathway in absence of ligand

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005794 Golgi apparatus
GO:0005829 cytosol
GO:0090575 RNA polymerase II transcription factor complex
GO:0005886 plasma membrane
GO:0005902 microvillus


-  Descriptions from all associated GenBank mRNAs
  AK298322 - Homo sapiens cDNA FLJ56924 complete cds, highly similar to WW domain-containing oxidoreductase (EC 1.1.1.-).
AF211943 - Homo sapiens WW domain-containing protein WWOX mRNA, complete cds.
AF395123 - Homo sapiens WWOXdelta6-8 mRNA, complete cds, alternatively spliced.
AF395124 - Homo sapiens WWOXdelta5-8 mRNA, complete cds, alternatively spliced.
AK027626 - Homo sapiens cDNA FLJ14720 fis, clone NT2RP3001495, highly similar to WW domain-containing oxidoreductase (EC 1.1.1.-).
AK291300 - Homo sapiens cDNA FLJ78250 complete cds, highly similar to Homo sapiens WW domain containing oxidoreductase (WWOX), transcript variant 1, mRNA.
AK290438 - Homo sapiens cDNA FLJ77452 complete cds, highly similar to Homo sapiens WW domain containing oxidoreductase (WWOX), transcript variant 1, mRNA.
AF227527 - Homo sapiens FOR II protein mRNA, complete cds.
LF213947 - JP 2014500723-A/21450: Polycomb-Associated Non-Coding RNAs.
AF227526 - Homo sapiens FOR I protein mRNA, complete cds.
BC003184 - Homo sapiens WW domain containing oxidoreductase, mRNA (cDNA clone MGC:666 IMAGE:3535809), complete cds.
AY256821 - Homo sapiens WOX8 isoform 8 (WWOX) mRNA, complete cds.
AB590073 - Synthetic construct DNA, clone: pFN21AB8011, Homo sapiens WWOX gene for WW domain containing oxidoreductase, without stop codon, in Flexi system.
U13395 - Human oxidoreductase (HHCMA56) mRNA, complete cds.
MA449524 - JP 2018138019-A/21450: Polycomb-Associated Non-Coding RNAs.
MH400250 - Homo sapiens WWOX isoform 1 (WWOX) mRNA, complete cds, alternatively spliced.
MH400251 - Homo sapiens WWOX isoform 2 (WWOX) mRNA, complete cds, alternatively spliced.
MH400252 - Homo sapiens WWOX isoform 3 (WWOX) mRNA, complete cds, alternatively spliced.
MH400253 - Homo sapiens WWOX isoform 4 (WWOX) mRNA, complete cds, alternatively spliced.
MH400254 - Homo sapiens WWOX isoform 5 (WWOX) mRNA, complete cds, alternatively spliced.
MH400255 - Homo sapiens WWOX isoform 6 (WWOX) mRNA, complete cds, alternatively spliced.
MH400256 - Homo sapiens WWOX isoform 7 (WWOX) mRNA, complete cds, alternatively spliced.
KJ902620 - Synthetic construct Homo sapiens clone ccsbBroadEn_12014 WWOX gene, encodes complete protein.
AF227528 - Homo sapiens FOR III protein mRNA, complete cds.
AF187015 - Homo sapiens truncated WW-domain oxidoreductase mRNA, complete cds.
AF239665 - Homo sapiens endogenous retrovirus HERVH and FOR mRNA, partial sequence.
AF227529 - Homo sapiens FOR IV protein mRNA, complete cds.
BT007445 - Homo sapiens WW domain containing oxidoreductase mRNA, complete cds.
MH400257 - Homo sapiens WWOX isoform 8 (WWOX) mRNA, complete cds, alternatively spliced.
LC106312 - Homo sapiens WWOX mRNA for WW domain-containing oxidoreductase, partial cds.
JD275099 - Sequence 256123 from Patent EP1572962.
JD081261 - Sequence 62285 from Patent EP1572962.
JD163237 - Sequence 144261 from Patent EP1572962.
JD450122 - Sequence 431146 from Patent EP1572962.
JD073487 - Sequence 54511 from Patent EP1572962.
JD488254 - Sequence 469278 from Patent EP1572962.
JD344574 - Sequence 325598 from Patent EP1572962.
JD143172 - Sequence 124196 from Patent EP1572962.
JD116591 - Sequence 97615 from Patent EP1572962.
JD067345 - Sequence 48369 from Patent EP1572962.
JD493647 - Sequence 474671 from Patent EP1572962.
JD208179 - Sequence 189203 from Patent EP1572962.
JD551718 - Sequence 532742 from Patent EP1572962.
MH400258 - Homo sapiens WWOX isoform 9 (WWOX) mRNA, partial sequence.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9NZC7 (Reactome details) participates in the following event(s):

R-HSA-1253343 WWOX binds ERBB4s80
R-HSA-8864569 WWOX binds TFAP2C
R-HSA-1251985 Nuclear signaling by ERBB4
R-HSA-8866904 Negative regulation of activity of TFAP2 (AP-2) family transcription factors
R-HSA-1236394 Signaling by ERBB4
R-HSA-8864260 Transcriptional regulation by the AP-2 (TFAP2) family of transcription factors
R-HSA-9006934 Signaling by Receptor Tyrosine Kinases
R-HSA-212436 Generic Transcription Pathway
R-HSA-162582 Signal Transduction
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: A8K323, ENST00000566780.1, ENST00000566780.2, ENST00000566780.3, ENST00000566780.4, ENST00000566780.5, FOR, NM_016373, Q5MYT5, Q96KM3, Q96RF2, Q9BTT8, Q9NPC9, Q9NRF4, Q9NRF5, Q9NRF6, Q9NRK1, Q9NZC5, Q9NZC7, SDR41C1, uc325wbn.1, uc325wbn.2, WOX1, WWOX_HUMAN
UCSC ID: ENST00000566780.6_4
RefSeq Accession: NM_016373.4
Protein: Q9NZC7 (aka WWOX_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.