Human Gene ZBTB4 (ENST00000380599.9_7) from GENCODE V47lift37
  Description: zinc finger and BTB domain containing 4, transcript variant 2 (from RefSeq NM_001128833.2)
Gencode Transcript: ENST00000380599.9_7
Gencode Gene: ENSG00000174282.12_9
Transcript (Including UTRs)
   Position: hg19 chr17:7,362,697-7,382,950 Size: 20,254 Total Exon Count: 4 Strand: -
Coding Region
   Position: hg19 chr17:7,365,259-7,370,120 Size: 4,862 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:7,362,697-7,382,950)mRNA (may differ from genome)Protein (1013 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMGIOMIMPubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ZBTB4_HUMAN
DESCRIPTION: RecName: Full=Zinc finger and BTB domain-containing protein 4; AltName: Full=KAISO-like zinc finger protein 1; Short=KAISO-L1;
FUNCTION: May be involved in transcriptional regulation.
SUBUNIT: Interacts with HIPK2.
SUBCELLULAR LOCATION: Nucleus (Potential).
PTM: Phosphorylated by HIPK2. This phosphorylation reduces stability and triggers ZBTB4 protein degradation in response to DNA damage.
SIMILARITY: Contains 1 BTB (POZ) domain.
SIMILARITY: Contains 6 C2H2-type zinc fingers.
SEQUENCE CAUTION: Sequence=BAA96062.2; Type=Erroneous initiation;

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 44.68 RPKM in Cervix - Endocervix
Total median expression: 1403.34 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -131.80256-0.515 Picture PostScript Text
3' UTR -859.802562-0.336 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000210 - BTB/POZ-like
IPR011333 - BTB/POZ_fold
IPR013069 - BTB_POZ
IPR007087 - Znf_C2H2
IPR015880 - Znf_C2H2-like
IPR013087 - Znf_C2H2/integrase_DNA-bd

Pfam Domains:
PF00651 - BTB/POZ domain
PF13913 - zinc-finger of a C2HC-type

SCOP Domains:
48371 - ARM repeat
54695 - POZ domain
57667 - beta-beta-alpha zinc fingers

ModBase Predicted Comparative 3D Structure on Q9P1Z0
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0008327 methyl-CpG binding
GO:0010428 methyl-CpNpG binding
GO:0019901 protein kinase binding
GO:0042803 protein homodimerization activity
GO:0043565 sequence-specific DNA binding
GO:0046872 metal ion binding

Biological Process:
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006974 cellular response to DNA damage stimulus
GO:0045892 negative regulation of transcription, DNA-templated

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005694 chromosome
GO:0005829 cytosol
GO:0016604 nuclear body


-  Descriptions from all associated GenBank mRNAs
  AY302699 - Homo sapiens KAISO-like zinc finger protein 1 mRNA, complete cds.
BC043352 - Homo sapiens zinc finger and BTB domain containing 4, mRNA (cDNA clone MGC:49935 IMAGE:6175382), complete cds.
AB040971 - Homo sapiens KIAA1538 mRNA for KIAA1538 protein.
JD440606 - Sequence 421630 from Patent EP1572962.
JD160062 - Sequence 141086 from Patent EP1572962.
JD063009 - Sequence 44033 from Patent EP1572962.
JD040181 - Sequence 21205 from Patent EP1572962.
JD179180 - Sequence 160204 from Patent EP1572962.
JD540838 - Sequence 521862 from Patent EP1572962.
JD158131 - Sequence 139155 from Patent EP1572962.
JD044988 - Sequence 26012 from Patent EP1572962.
JD170397 - Sequence 151421 from Patent EP1572962.
JD096903 - Sequence 77927 from Patent EP1572962.
BC015902 - Homo sapiens zinc finger and BTB domain containing 4, mRNA (cDNA clone IMAGE:3915660), partial cds.
AK027143 - Homo sapiens cDNA: FLJ23490 fis, clone LNG00783.
BC033259 - Homo sapiens zinc finger and BTB domain containing 4, mRNA (cDNA clone IMAGE:5458582), partial cds.
AK122826 - Homo sapiens cDNA FLJ16429 fis, clone BRACE3008238, highly similar to Zinc finger and BTB domain-containing protein 4.
AK122971 - Homo sapiens cDNA FLJ16715 fis, clone UTERU3000298, highly similar to Zinc finger and BTB domain-containing protein 4.
JD521446 - Sequence 502470 from Patent EP1572962.
JD247398 - Sequence 228422 from Patent EP1572962.
JD464485 - Sequence 445509 from Patent EP1572962.
JD083317 - Sequence 64341 from Patent EP1572962.
JD239798 - Sequence 220822 from Patent EP1572962.
JD560248 - Sequence 541272 from Patent EP1572962.
JD248924 - Sequence 229948 from Patent EP1572962.
JD564015 - Sequence 545039 from Patent EP1572962.
JD504676 - Sequence 485700 from Patent EP1572962.
JD486001 - Sequence 467025 from Patent EP1572962.
JD289599 - Sequence 270623 from Patent EP1572962.
JD264857 - Sequence 245881 from Patent EP1572962.
JD534349 - Sequence 515373 from Patent EP1572962.
JD220642 - Sequence 201666 from Patent EP1572962.
JD242227 - Sequence 223251 from Patent EP1572962.
JD252277 - Sequence 233301 from Patent EP1572962.
JD425842 - Sequence 406866 from Patent EP1572962.
JD512633 - Sequence 493657 from Patent EP1572962.
JD237000 - Sequence 218024 from Patent EP1572962.
JD251079 - Sequence 232103 from Patent EP1572962.
JD379861 - Sequence 360885 from Patent EP1572962.
JD390762 - Sequence 371786 from Patent EP1572962.
JD132642 - Sequence 113666 from Patent EP1572962.
JD090842 - Sequence 71866 from Patent EP1572962.
JD555184 - Sequence 536208 from Patent EP1572962.
JD432883 - Sequence 413907 from Patent EP1572962.
JD200922 - Sequence 181946 from Patent EP1572962.
JD437241 - Sequence 418265 from Patent EP1572962.
JD289359 - Sequence 270383 from Patent EP1572962.
JD371653 - Sequence 352677 from Patent EP1572962.
JD509457 - Sequence 490481 from Patent EP1572962.
JD483378 - Sequence 464402 from Patent EP1572962.
JD149888 - Sequence 130912 from Patent EP1572962.
JD501381 - Sequence 482405 from Patent EP1572962.
JD531783 - Sequence 512807 from Patent EP1572962.
JD566350 - Sequence 547374 from Patent EP1572962.
JD215476 - Sequence 196500 from Patent EP1572962.
JD108395 - Sequence 89419 from Patent EP1572962.
BC131774 - Homo sapiens zinc finger and BTB domain containing 4, mRNA (cDNA clone IMAGE:40123420), complete cds.
JD135169 - Sequence 116193 from Patent EP1572962.
KJ899360 - Synthetic construct Homo sapiens clone ccsbBroadEn_08754 ZBTB4 gene, encodes complete protein.
AB384230 - Synthetic construct DNA, clone: pF1KSDA1538, Homo sapiens ZBTB4 gene for zinc finger and BTB domain-containing protein 4, complete cds, without stop codon, in Flexi system.
DQ585297 - Homo sapiens piRNA piR-52409, complete sequence.
JD339221 - Sequence 320245 from Patent EP1572962.
DQ584434 - Homo sapiens piRNA piR-51546, complete sequence.
JD112964 - Sequence 93988 from Patent EP1572962.
JD492390 - Sequence 473414 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: B3KVL6, ENST00000380599.1, ENST00000380599.2, ENST00000380599.3, ENST00000380599.4, ENST00000380599.5, ENST00000380599.6, ENST00000380599.7, ENST00000380599.8, KIAA1538, NM_001128833, Q7Z697, Q86XJ4, Q8N4V8, Q9P1Z0, uc318psb.1, uc318psb.2, ZBTB4_HUMAN
UCSC ID: ENST00000380599.9_7
RefSeq Accession: NM_001128833.2
Protein: Q9P1Z0 (aka ZBTB4_HUMAN or ZBT4_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.