Human Gene ZCCHC8 (ENST00000633063.3_8) from GENCODE V47lift37
  Description: zinc finger CCHC-type containing 8, transcript variant 1 (from RefSeq NM_017612.5)
Gencode Transcript: ENST00000633063.3_8
Gencode Gene: ENSG00000033030.16_15
Transcript (Including UTRs)
   Position: hg19 chr12:122,956,147-122,985,479 Size: 29,333 Total Exon Count: 14 Strand: -
Coding Region
   Position: hg19 chr12:122,958,044-122,985,387 Size: 27,344 Coding Exon Count: 14 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesGeneReviewsModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:122,956,147-122,985,479)mRNA (may differ from genome)Protein (707 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ZCHC8_HUMAN
DESCRIPTION: RecName: Full=Zinc finger CCHC domain-containing protein 8;
FUNCTION: May be involved in pre-mRNA splicing.
SUBUNIT: Identified in the spliceosome C complex.
INTERACTION: P38398:BRCA1; NbExp=2; IntAct=EBI-1263058, EBI-349905;
PTM: Phosphorylated upon DNA damage, probably by ATM or ATR.
SIMILARITY: Belongs to the ZCCHC8 family.
SIMILARITY: Contains 1 CCHC-type zinc finger.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -24.5092-0.266 Picture PostScript Text
3' UTR -754.201897-0.398 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR006568 - PSP
IPR001878 - Znf_CCHC

Pfam Domains:
PF00098 - Zinc knuckle
PF04046 - PSP
PF14392 - Zinc knuckle

SCOP Domains:
160459 - BLRF2-like
57756 - Retrovirus zinc finger-like domains
75704 - Mitotic arrest deficient-like 1, Mad1

ModBase Predicted Comparative 3D Structure on Q6NZY4
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0046872 metal ion binding

Biological Process:
GO:0000398 mRNA splicing, via spliceosome
GO:0006397 mRNA processing
GO:0008380 RNA splicing

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005681 spliceosomal complex
GO:0016604 nuclear body
GO:0071013 catalytic step 2 spliceosome
GO:0005730 nucleolus


-  Descriptions from all associated GenBank mRNAs
  LF384019 - JP 2014500723-A/191522: Polycomb-Associated Non-Coding RNAs.
JD144705 - Sequence 125729 from Patent EP1572962.
JD144704 - Sequence 125728 from Patent EP1572962.
JD243951 - Sequence 224975 from Patent EP1572962.
JD311986 - Sequence 293010 from Patent EP1572962.
JD070336 - Sequence 51360 from Patent EP1572962.
JD070335 - Sequence 51359 from Patent EP1572962.
JD514145 - Sequence 495169 from Patent EP1572962.
JD070333 - Sequence 51357 from Patent EP1572962.
JD070334 - Sequence 51358 from Patent EP1572962.
JD514144 - Sequence 495168 from Patent EP1572962.
JD514146 - Sequence 495170 from Patent EP1572962.
AL157434 - Homo sapiens mRNA; cDNA DKFZp434O0420 (from clone DKFZp434O0420).
BC017704 - Homo sapiens zinc finger, CCHC domain containing 8, mRNA (cDNA clone IMAGE:4399639), partial cds.
AK026831 - Homo sapiens cDNA: FLJ23178 fis, clone LNG10715.
AL157433 - Homo sapiens mRNA; cDNA DKFZp434E2220 (from clone DKFZp434E2220).
BC065918 - Homo sapiens zinc finger, CCHC domain containing 8, mRNA (cDNA clone MGC:75002 IMAGE:5752053), complete cds.
AK074638 - Homo sapiens cDNA FLJ90157 fis, clone HEMBB1002302.
AK027702 - Homo sapiens cDNA FLJ14796 fis, clone NT2RP4001235.
AK291174 - Homo sapiens cDNA FLJ76187 complete cds.
JD301056 - Sequence 282080 from Patent EP1572962.
JD146827 - Sequence 127851 from Patent EP1572962.
AB384372 - Synthetic construct DNA, clone: pF1KSDB0035, Homo sapiens ZCCHC8 gene for zinc finger CCCH-type containing protein 8, complete cds, without stop codon, in Flexi system.
KJ899155 - Synthetic construct Homo sapiens clone ccsbBroadEn_08549 ZCCHC8 gene, encodes complete protein.
LF359627 - JP 2014500723-A/167130: Polycomb-Associated Non-Coding RNAs.
LF359628 - JP 2014500723-A/167131: Polycomb-Associated Non-Coding RNAs.
LF359629 - JP 2014500723-A/167132: Polycomb-Associated Non-Coding RNAs.
LF359630 - JP 2014500723-A/167133: Polycomb-Associated Non-Coding RNAs.
LF359631 - JP 2014500723-A/167134: Polycomb-Associated Non-Coding RNAs.
LF359632 - JP 2014500723-A/167135: Polycomb-Associated Non-Coding RNAs.
AK307318 - Homo sapiens cDNA, FLJ97266.
LF359633 - JP 2014500723-A/167136: Polycomb-Associated Non-Coding RNAs.
JD036918 - Sequence 17942 from Patent EP1572962.
LF359636 - JP 2014500723-A/167139: Polycomb-Associated Non-Coding RNAs.
JD280700 - Sequence 261724 from Patent EP1572962.
JD521839 - Sequence 502863 from Patent EP1572962.
JD564666 - Sequence 545690 from Patent EP1572962.
JD184429 - Sequence 165453 from Patent EP1572962.
LF359641 - JP 2014500723-A/167144: Polycomb-Associated Non-Coding RNAs.
LF359642 - JP 2014500723-A/167145: Polycomb-Associated Non-Coding RNAs.
JD023021 - Sequence 4045 from Patent EP1572962.
JD028831 - Sequence 9855 from Patent EP1572962.
MA619596 - JP 2018138019-A/191522: Polycomb-Associated Non-Coding RNAs.
MA595204 - JP 2018138019-A/167130: Polycomb-Associated Non-Coding RNAs.
MA595205 - JP 2018138019-A/167131: Polycomb-Associated Non-Coding RNAs.
MA595206 - JP 2018138019-A/167132: Polycomb-Associated Non-Coding RNAs.
MA595207 - JP 2018138019-A/167133: Polycomb-Associated Non-Coding RNAs.
MA595208 - JP 2018138019-A/167134: Polycomb-Associated Non-Coding RNAs.
MA595209 - JP 2018138019-A/167135: Polycomb-Associated Non-Coding RNAs.
MA595210 - JP 2018138019-A/167136: Polycomb-Associated Non-Coding RNAs.
MA595213 - JP 2018138019-A/167139: Polycomb-Associated Non-Coding RNAs.
MA595218 - JP 2018138019-A/167144: Polycomb-Associated Non-Coding RNAs.
MA595219 - JP 2018138019-A/167145: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000633063.1, ENST00000633063.2, NM_017612, Q6NZY4, Q7L2P6, Q8N2K5, Q96SK7, Q9NSS2, Q9NSS3, uc328amn.1, uc328amn.2, ZCHC8_HUMAN
UCSC ID: ENST00000633063.3_8
RefSeq Accession: NM_017612.5
Protein: Q6NZY4 (aka ZCHC8_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene ZCCHC8:
dkc (Dyskeratosis Congenita and Related Telomere Biology Disorders)
pf (Pulmonary Fibrosis Predisposition Overview)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.