Human Gene ZFP36L2 (ENST00000282388.4_8) from GENCODE V47lift37
  Description: ZFP36 ring finger protein like 2 (from RefSeq NM_006887.5)
Gencode Transcript: ENST00000282388.4_8
Gencode Gene: ENSG00000152518.8_10
Transcript (Including UTRs)
   Position: hg19 chr2:43,449,541-43,453,745 Size: 4,205 Total Exon Count: 2 Strand: -
Coding Region
   Position: hg19 chr2:43,451,458-43,453,454 Size: 1,997 Coding Exon Count: 2 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:43,449,541-43,453,745)mRNA (may differ from genome)Protein (494 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedUniProtKB
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: TISD_HUMAN
DESCRIPTION: RecName: Full=Zinc finger protein 36, C3H1 type-like 2; Short=ZFP36-like 2; AltName: Full=Butyrate response factor 2; AltName: Full=EGF-response factor 2; Short=ERF-2; AltName: Full=Protein TIS11D;
FUNCTION: Probable regulatory protein involved in regulating the response to growth factors. RNA-binding protein that binds to 5'UUAUUUAUUU-3' core sequence. Binds to the class II AU-rich element (ARE) in the 3'-UTR of target mRNAs and promotes their deadenylation and degradation.
SUBCELLULAR LOCATION: Nucleus (Potential).
SIMILARITY: Contains 2 C3H1-type zinc fingers.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ZFP36L2
Diseases sorted by gene-association score: acute t cell leukemia (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 162.74 RPKM in Thyroid
Total median expression: 3682.15 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -131.30291-0.451 Picture PostScript Text
3' UTR -504.501917-0.263 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007635 - Tis11B_N
IPR000571 - Znf_CCCH

Pfam Domains:
PF00642 - Zinc finger C-x8-C-x5-C-x3-H type (and similar)
PF04553 - Tis11B like protein, N terminus
PF14608 - RNA-binding, Nab2-type zinc finger
PF18345 - Zinc finger domain

SCOP Domains:
90229 - CCCH zinc finger

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1RGO - NMR MuPIT


ModBase Predicted Comparative 3D Structure on P47974
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details  Gene Details  
Gene Sorter  Gene Sorter  
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677 DNA binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0017091 AU-rich element binding
GO:0035925 mRNA 3'-UTR AU-rich region binding
GO:0046872 metal ion binding

Biological Process:
GO:0000165 MAPK cascade
GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0006355 regulation of transcription, DNA-templated
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0006402 mRNA catabolic process
GO:0007275 multicellular organism development
GO:0008283 cell proliferation
GO:0009611 response to wounding
GO:0030097 hemopoiesis
GO:0033077 T cell differentiation in thymus
GO:0035019 somatic stem cell population maintenance
GO:0043488 regulation of mRNA stability
GO:0044344 cellular response to fibroblast growth factor stimulus
GO:0045577 regulation of B cell differentiation
GO:0045599 negative regulation of fat cell differentiation
GO:0048103 somatic stem cell division
GO:0060216 definitive hemopoiesis
GO:0061158 3'-UTR-mediated mRNA destabilization
GO:0070371 ERK1 and ERK2 cascade
GO:0071356 cellular response to tumor necrosis factor
GO:0071364 cellular response to epidermal growth factor stimulus
GO:0071385 cellular response to glucocorticoid stimulus
GO:0071560 cellular response to transforming growth factor beta stimulus
GO:0097011 cellular response to granulocyte macrophage colony-stimulating factor stimulus
GO:1900153 positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:1901991 negative regulation of mitotic cell cycle phase transition
GO:2000737 negative regulation of stem cell differentiation

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  JD560153 - Sequence 541177 from Patent EP1572962.
JD485748 - Sequence 466772 from Patent EP1572962.
JD561991 - Sequence 543015 from Patent EP1572962.
JD291917 - Sequence 272941 from Patent EP1572962.
JD288736 - Sequence 269760 from Patent EP1572962.
JD114367 - Sequence 95391 from Patent EP1572962.
JD248126 - Sequence 229150 from Patent EP1572962.
JD451628 - Sequence 432652 from Patent EP1572962.
JD302743 - Sequence 283767 from Patent EP1572962.
JD301362 - Sequence 282386 from Patent EP1572962.
BC005010 - Homo sapiens zinc finger protein 36, C3H type-like 2, mRNA (cDNA clone MGC:10502 IMAGE:3640393), complete cds.
JD550095 - Sequence 531119 from Patent EP1572962.
JD435866 - Sequence 416890 from Patent EP1572962.
JD557081 - Sequence 538105 from Patent EP1572962.
JD115909 - Sequence 96933 from Patent EP1572962.
X78992 - H.sapiens ERF-2 mRNA.
JD496015 - Sequence 477039 from Patent EP1572962.
JD461400 - Sequence 442424 from Patent EP1572962.
JD217409 - Sequence 198433 from Patent EP1572962.
JD043896 - Sequence 24920 from Patent EP1572962.
JD406364 - Sequence 387388 from Patent EP1572962.
DQ893399 - Synthetic construct clone IMAGE:100006029; FLH199475.01X; RZPDo839C0782D zinc finger protein 36, C3H type-like 2 (ZFP36L2) gene, encodes complete protein.
DQ896782 - Synthetic construct Homo sapiens clone IMAGE:100011242; FLH199381.01L; RZPDo839C0781D zinc finger protein 36, C3H type-like 2 (ZFP36L2) gene, encodes complete protein.
JD025736 - Sequence 6760 from Patent EP1572962.
JD029852 - Sequence 10876 from Patent EP1572962.
BC020369 - Homo sapiens zinc finger protein 36, C3H type-like 2, mRNA (cDNA clone IMAGE:4149316).
JD462915 - Sequence 443939 from Patent EP1572962.
JD253976 - Sequence 235000 from Patent EP1572962.
JD143353 - Sequence 124377 from Patent EP1572962.
JD129821 - Sequence 110845 from Patent EP1572962.
JD518932 - Sequence 499956 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000282388.1, ENST00000282388.2, ENST00000282388.3, ERF2 , NM_006887, P47974, Q53TB4, Q9BSJ3, RNF162C, TIS11D , TISD_HUMAN, uc317jzj.1, uc317jzj.2, ZFP36L2
UCSC ID: ENST00000282388.4_8
RefSeq Accession: NM_006887.5
Protein: P47974 (aka TISD_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.