Human Gene ZGLP1 (ENST00000707000.1_3) from GENCODE V47lift37
  Description: zinc finger, GATA-like protein 1 (from HGNC ZGLP1)
Gencode Transcript: ENST00000707000.1_3
Gencode Gene: ENSG00000220201.8_11
Transcript (Including UTRs)
   Position: hg19 chr19:10,415,479-10,420,491 Size: 5,013 Total Exon Count: 5 Strand: -
Coding Region
   Position: hg19 chr19:10,415,767-10,420,161 Size: 4,395 Coding Exon Count: 5 

Page IndexSequence and LinksPrimersCTDGene AllelesRNA Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:10,415,479-10,420,491)mRNA (may differ from genome)Protein (273 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblExonPrimerGeneCardsHGNCMGI
PubMedUniProtKB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -153.70330-0.466 Picture PostScript Text
3' UTR -121.10288-0.420 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Descriptions from all associated GenBank mRNAs
  AK096830 - Homo sapiens cDNA FLJ39511 fis, clone PROST2018583.
BC044225 - Homo sapiens similar to RIKEN cDNA B230118G17 gene, mRNA (cDNA clone IMAGE:5767577), partial cds.
BC029904 - Homo sapiens GATA like protein-1, mRNA (cDNA clone IMAGE:5173990), with apparent retained intron.
AB590992 - Synthetic construct DNA, clone: pFN21AE1224, Homo sapiens ZGLP1 gene for zinc finger, GATA-like protein 1, without stop codon, in Flexi system.
AK097022 - Homo sapiens cDNA FLJ39703 fis, clone SMINT2012195.
JD342061 - Sequence 323085 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A9L9PXT6, A0A9L9PXT6_HUMAN, NM_001409033, uc331nch.1, uc331nch.2, ZGLP1
UCSC ID: ENST00000707000.1_3
RefSeq Accession: NM_001103167.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.